Hb_001009_080

Information

Type -
Description -
Location Contig1009: 39198-42600
Sequence    

Annotation

kegg
ID rcu:RCOM_1506880
description hypothetical protein
nr
ID XP_002511223.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAJ8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1506880 PE=4 SV=1
Gene Ontology
ID GO:0007059
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_00518: 39193-42596
cDNA
(Sanger)
(ID:Location)		 025_L18.ab1: 39193-40494 , 043_O14.ab1: 39203-40410

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_080 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000692_160 0.0963069335 - - Transportin 1 isoform 1 [Theobroma cacao]
3 Hb_001269_140 0.1055250664 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
4 Hb_001232_010 0.1069438573 - - PREDICTED: uncharacterized protein LOC105634976 [Jatropha curcas]
5 Hb_003906_170 0.117307004 - - alcohol dehydrogenase, putative [Ricinus communis]
6 Hb_002972_020 0.1199823589 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
7 Hb_001761_130 0.1252821728 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
8 Hb_002217_030 0.1268413806 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 isoform X1 [Jatropha curcas]
9 Hb_005081_020 0.1300777807 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
10 Hb_001427_070 0.1309691369 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
11 Hb_000200_120 0.1360515192 - - PREDICTED: probable fructose-bisphosphate aldolase 3, chloroplastic [Jatropha curcas]
12 Hb_000152_660 0.1379108402 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
13 Hb_000237_190 0.1402063814 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 3 isoform X1 [Jatropha curcas]
14 Hb_000140_480 0.1427104382 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
15 Hb_077562_030 0.1431912954 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
16 Hb_083799_010 0.1440462969 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_005048_100 0.1444417683 - - secretory carrier membrane protein, putative [Ricinus communis]
18 Hb_000684_290 0.1445967405 - - ubiquitin protein ligase E3a, putative [Ricinus communis]
19 Hb_033501_010 0.1459705373 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
20 Hb_075315_010 0.1462857821 - - ornithine aminotransferase [Camellia sinensis]

Gene co-expression network

sample Hb_001009_080 Hb_001009_080 Hb_000692_160 Hb_000692_160 Hb_001009_080--Hb_000692_160 Hb_001269_140 Hb_001269_140 Hb_001009_080--Hb_001269_140 Hb_001232_010 Hb_001232_010 Hb_001009_080--Hb_001232_010 Hb_003906_170 Hb_003906_170 Hb_001009_080--Hb_003906_170 Hb_002972_020 Hb_002972_020 Hb_001009_080--Hb_002972_020 Hb_001761_130 Hb_001761_130 Hb_001009_080--Hb_001761_130 Hb_005081_020 Hb_005081_020 Hb_000692_160--Hb_005081_020 Hb_000692_160--Hb_003906_170 Hb_083799_010 Hb_083799_010 Hb_000692_160--Hb_083799_010 Hb_075315_010 Hb_075315_010 Hb_000692_160--Hb_075315_010 Hb_002272_170 Hb_002272_170 Hb_000692_160--Hb_002272_170 Hb_002307_280 Hb_002307_280 Hb_001269_140--Hb_002307_280 Hb_001269_140--Hb_001761_130 Hb_001269_140--Hb_005081_020 Hb_001105_160 Hb_001105_160 Hb_001269_140--Hb_001105_160 Hb_001434_080 Hb_001434_080 Hb_001269_140--Hb_001434_080 Hb_001123_050 Hb_001123_050 Hb_001269_140--Hb_001123_050 Hb_003647_130 Hb_003647_130 Hb_001232_010--Hb_003647_130 Hb_002217_030 Hb_002217_030 Hb_001232_010--Hb_002217_030 Hb_001232_010--Hb_001761_130 Hb_001157_090 Hb_001157_090 Hb_001232_010--Hb_001157_090 Hb_002477_090 Hb_002477_090 Hb_001232_010--Hb_002477_090 Hb_143629_110 Hb_143629_110 Hb_001232_010--Hb_143629_110 Hb_000159_120 Hb_000159_120 Hb_003906_170--Hb_000159_120 Hb_003906_170--Hb_005081_020 Hb_003906_170--Hb_083799_010 Hb_000327_250 Hb_000327_250 Hb_003906_170--Hb_000327_250 Hb_003906_170--Hb_075315_010 Hb_011512_090 Hb_011512_090 Hb_002972_020--Hb_011512_090 Hb_001427_070 Hb_001427_070 Hb_002972_020--Hb_001427_070 Hb_001089_040 Hb_001089_040 Hb_002972_020--Hb_001089_040 Hb_002972_020--Hb_001232_010 Hb_000140_480 Hb_000140_480 Hb_002972_020--Hb_000140_480 Hb_172632_110 Hb_172632_110 Hb_001761_130--Hb_172632_110 Hb_006831_040 Hb_006831_040 Hb_001761_130--Hb_006831_040 Hb_017358_040 Hb_017358_040 Hb_001761_130--Hb_017358_040 Hb_001761_130--Hb_002477_090 Hb_010174_110 Hb_010174_110 Hb_001761_130--Hb_010174_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.17984 4.20802 2.5423 5.05925 5.6776 4.27583
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.25896 2.49206 4.05513 13.205 1.90665

CAGE analysis