Hb_003906_170

Information

Type -
Description -
Location Contig3906: 87606-92859
Sequence    

Annotation

kegg
ID rcu:RCOM_1497750
description alcohol dehydrogenase, putative (EC:1.1.1.14)
nr
ID XP_002510856.1
description alcohol dehydrogenase, putative [Ricinus communis]
swissprot
ID Q1PSI9
description L-idonate 5-dehydrogenase OS=Vitis vinifera GN=VIT_16s0100g00290 PE=1 SV=2
trembl
ID B9R9I1
description Alcohol dehydrogenase, putative OS=Ricinus communis GN=RCOM_1497750 PE=3 SV=1
Gene Ontology
ID GO:0005829
description sorbitol dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39167: 90713-91954
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003906_170 0.0 - - alcohol dehydrogenase, putative [Ricinus communis]
2 Hb_000159_120 0.0823793176 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
3 Hb_000692_160 0.0921561765 - - Transportin 1 isoform 1 [Theobroma cacao]
4 Hb_005081_020 0.0922163215 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
5 Hb_083799_010 0.0946481254 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_000327_250 0.10219388 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
7 Hb_075315_010 0.1036687589 - - ornithine aminotransferase [Camellia sinensis]
8 Hb_000395_220 0.1038516922 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
9 Hb_005333_050 0.1053599206 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
10 Hb_001019_050 0.1066346063 - - PREDICTED: importin-13 [Jatropha curcas]
11 Hb_009732_020 0.1075293938 - - PREDICTED: zinc-metallopeptidase, peroxisomal-like [Jatropha curcas]
12 Hb_107298_010 0.1076620622 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
13 Hb_039946_050 0.1078532442 - - catalytic, putative [Ricinus communis]
14 Hb_025336_020 0.1089280231 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
15 Hb_012022_080 0.11053891 - - ubiquitin-protein ligase, putative [Ricinus communis]
16 Hb_003544_030 0.1119210041 - - PREDICTED: citrate synthase, glyoxysomal [Jatropha curcas]
17 Hb_007441_280 0.1125347748 - - hypothetical protein JCGZ_14672 [Jatropha curcas]
18 Hb_033501_010 0.1135392631 - - hypothetical protein JCGZ_21381 [Jatropha curcas]
19 Hb_005489_140 0.1145801114 - - PREDICTED: maspardin [Jatropha curcas]
20 Hb_005663_110 0.1154463901 - - PREDICTED: large proline-rich protein BAG6 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_003906_170 Hb_003906_170 Hb_000159_120 Hb_000159_120 Hb_003906_170--Hb_000159_120 Hb_000692_160 Hb_000692_160 Hb_003906_170--Hb_000692_160 Hb_005081_020 Hb_005081_020 Hb_003906_170--Hb_005081_020 Hb_083799_010 Hb_083799_010 Hb_003906_170--Hb_083799_010 Hb_000327_250 Hb_000327_250 Hb_003906_170--Hb_000327_250 Hb_075315_010 Hb_075315_010 Hb_003906_170--Hb_075315_010 Hb_012022_080 Hb_012022_080 Hb_000159_120--Hb_012022_080 Hb_008226_070 Hb_008226_070 Hb_000159_120--Hb_008226_070 Hb_001019_050 Hb_001019_050 Hb_000159_120--Hb_001019_050 Hb_001221_020 Hb_001221_020 Hb_000159_120--Hb_001221_020 Hb_107298_010 Hb_107298_010 Hb_000159_120--Hb_107298_010 Hb_000692_160--Hb_005081_020 Hb_000692_160--Hb_083799_010 Hb_001009_080 Hb_001009_080 Hb_000692_160--Hb_001009_080 Hb_000692_160--Hb_075315_010 Hb_002272_170 Hb_002272_170 Hb_000692_160--Hb_002272_170 Hb_005081_020--Hb_083799_010 Hb_005081_020--Hb_075315_010 Hb_002391_210 Hb_002391_210 Hb_005081_020--Hb_002391_210 Hb_001269_140 Hb_001269_140 Hb_005081_020--Hb_001269_140 Hb_083799_010--Hb_002272_170 Hb_000395_220 Hb_000395_220 Hb_083799_010--Hb_000395_220 Hb_083799_010--Hb_075315_010 Hb_007426_140 Hb_007426_140 Hb_083799_010--Hb_007426_140 Hb_000260_660 Hb_000260_660 Hb_083799_010--Hb_000260_660 Hb_003544_030 Hb_003544_030 Hb_000327_250--Hb_003544_030 Hb_016347_010 Hb_016347_010 Hb_000327_250--Hb_016347_010 Hb_005663_110 Hb_005663_110 Hb_000327_250--Hb_005663_110 Hb_004096_110 Hb_004096_110 Hb_000327_250--Hb_004096_110 Hb_021576_010 Hb_021576_010 Hb_000327_250--Hb_021576_010 Hb_001434_080 Hb_001434_080 Hb_000327_250--Hb_001434_080 Hb_039946_050 Hb_039946_050 Hb_075315_010--Hb_039946_050 Hb_004450_070 Hb_004450_070 Hb_075315_010--Hb_004450_070 Hb_007747_170 Hb_007747_170 Hb_075315_010--Hb_007747_170 Hb_001105_160 Hb_001105_160 Hb_075315_010--Hb_001105_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.94395 8.67826 5.12188 9.59554 6.11281 5.97543
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.91648 5.04785 4.05773 20.1198 5.89479

CAGE analysis