Hb_002391_210

Information

Type -
Description -
Location Contig2391: 140060-144742
Sequence    

Annotation

kegg
ID rcu:RCOM_0871250
description hypothetical protein
nr
ID XP_012065340.1
description PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
swissprot
ID Q9SHX9
description Putative F-box protein At1g65770 OS=Arabidopsis thaliana GN=At1g65770 PE=4 SV=1
trembl
ID A0A067LHR7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22346 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25054: 143787-143947 , PASA_asmbl_25055: 144530-145488
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002391_210 0.0 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
2 Hb_172632_110 0.0783549583 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
3 Hb_002400_410 0.0850454467 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
4 Hb_001761_130 0.0863189385 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]
5 Hb_007747_080 0.0883461772 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001021_080 0.0895092379 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
7 Hb_005081_020 0.0903696415 - - PREDICTED: ninja-family protein mc410 [Jatropha curcas]
8 Hb_000402_190 0.0919914085 - - PREDICTED: F-box protein At1g70590 [Jatropha curcas]
9 Hb_000152_660 0.0962455413 - - PREDICTED: BAG family molecular chaperone regulator 7 [Jatropha curcas]
10 Hb_119530_010 0.0964541058 - - -
11 Hb_000140_480 0.1000871929 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
12 Hb_002344_060 0.1009042154 - - PREDICTED: methylthioribose-1-phosphate isomerase [Jatropha curcas]
13 Hb_001427_070 0.1017427316 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
14 Hb_007904_130 0.1034348163 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
15 Hb_000739_100 0.1034712816 - - ku P80 DNA helicase, putative [Ricinus communis]
16 Hb_001269_140 0.1042713062 - - PREDICTED: nuclear pore complex protein NUP96 [Jatropha curcas]
17 Hb_002153_030 0.1047151336 - - E3 ubiquitin-protein ligase UPL5 [Theobroma cacao]
18 Hb_000614_240 0.1049889329 - - PREDICTED: signal recognition particle subunit SRP72 [Jatropha curcas]
19 Hb_011016_050 0.1057244642 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 isoform X1 [Jatropha curcas]
20 Hb_001170_030 0.1057851652 - - synaptonemal complex protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_002391_210 Hb_002391_210 Hb_172632_110 Hb_172632_110 Hb_002391_210--Hb_172632_110 Hb_002400_410 Hb_002400_410 Hb_002391_210--Hb_002400_410 Hb_001761_130 Hb_001761_130 Hb_002391_210--Hb_001761_130 Hb_007747_080 Hb_007747_080 Hb_002391_210--Hb_007747_080 Hb_001021_080 Hb_001021_080 Hb_002391_210--Hb_001021_080 Hb_005081_020 Hb_005081_020 Hb_002391_210--Hb_005081_020 Hb_172632_110--Hb_001761_130 Hb_006831_040 Hb_006831_040 Hb_172632_110--Hb_006831_040 Hb_010174_110 Hb_010174_110 Hb_172632_110--Hb_010174_110 Hb_172632_110--Hb_001021_080 Hb_000002_010 Hb_000002_010 Hb_172632_110--Hb_000002_010 Hb_003294_070 Hb_003294_070 Hb_002400_410--Hb_003294_070 Hb_007416_120 Hb_007416_120 Hb_002400_410--Hb_007416_120 Hb_002471_290 Hb_002471_290 Hb_002400_410--Hb_002471_290 Hb_119530_010 Hb_119530_010 Hb_002400_410--Hb_119530_010 Hb_009079_030 Hb_009079_030 Hb_002400_410--Hb_009079_030 Hb_000181_400 Hb_000181_400 Hb_002400_410--Hb_000181_400 Hb_001761_130--Hb_006831_040 Hb_017358_040 Hb_017358_040 Hb_001761_130--Hb_017358_040 Hb_002477_090 Hb_002477_090 Hb_001761_130--Hb_002477_090 Hb_001232_010 Hb_001232_010 Hb_001761_130--Hb_001232_010 Hb_001761_130--Hb_010174_110 Hb_005396_150 Hb_005396_150 Hb_007747_080--Hb_005396_150 Hb_003544_030 Hb_003544_030 Hb_007747_080--Hb_003544_030 Hb_001157_200 Hb_001157_200 Hb_007747_080--Hb_001157_200 Hb_000984_170 Hb_000984_170 Hb_007747_080--Hb_000984_170 Hb_112198_010 Hb_112198_010 Hb_007747_080--Hb_112198_010 Hb_007747_080--Hb_119530_010 Hb_008147_070 Hb_008147_070 Hb_001021_080--Hb_008147_070 Hb_000739_100 Hb_000739_100 Hb_001021_080--Hb_000739_100 Hb_001021_080--Hb_006831_040 Hb_001157_090 Hb_001157_090 Hb_001021_080--Hb_001157_090 Hb_083799_010 Hb_083799_010 Hb_005081_020--Hb_083799_010 Hb_000692_160 Hb_000692_160 Hb_005081_020--Hb_000692_160 Hb_075315_010 Hb_075315_010 Hb_005081_020--Hb_075315_010 Hb_001269_140 Hb_001269_140 Hb_005081_020--Hb_001269_140 Hb_003906_170 Hb_003906_170 Hb_005081_020--Hb_003906_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.57342 2.88162 0.937859 2.37924 1.24057 2.19117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.18395 1.43207 2.43876 4.52806 1.53533

CAGE analysis