Hb_008147_070

Information

Type -
Description -
Location Contig8147: 48468-53207
Sequence    

Annotation

kegg
ID pop:POPTR_0017s14220g
description hypothetical protein
nr
ID XP_012088137.1
description PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
swissprot
ID O67409
description Tryptophan synthase beta chain 2 OS=Aquifex aeolicus (strain VF5) GN=trpB2 PE=3 SV=1
trembl
ID A0A067JNH7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25649 PE=3 SV=1
Gene Ontology
ID GO:0009507
description tryptophan synthase beta chain 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59335: 48555-51018 , PASA_asmbl_59336: 48643-48900 , PASA_asmbl_59337: 49478-49786 , PASA_asmbl_59338: 51281-53127
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008147_070 0.0 - - PREDICTED: tryptophan synthase beta chain 1 [Jatropha curcas]
2 Hb_001021_080 0.0841365622 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
3 Hb_119494_010 0.1011422125 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
4 Hb_077562_030 0.1030013054 - - PREDICTED: cytochrome P450 4X1-like isoform X1 [Jatropha curcas]
5 Hb_109002_020 0.1166705946 - - PREDICTED: CTP synthase-like [Jatropha curcas]
6 Hb_002400_410 0.1167009604 - - PREDICTED: topless-related protein 1-like [Jatropha curcas]
7 Hb_172632_110 0.121072609 - - PREDICTED: pumilio homolog 5 [Jatropha curcas]
8 Hb_002391_210 0.121604687 - - PREDICTED: putative F-box protein At1g65770 [Jatropha curcas]
9 Hb_001017_050 0.1240178034 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
10 Hb_008864_090 0.1286788459 - - PREDICTED: plastid division protein PDV2-like [Jatropha curcas]
11 Hb_011716_070 0.1347795847 transcription factor TF Family: HRT PREDICTED: uncharacterized protein LOC105637858 isoform X1 [Jatropha curcas]
12 Hb_001427_070 0.1356124692 - - PREDICTED: xaa-Pro dipeptidase [Jatropha curcas]
13 Hb_014894_010 0.1370832489 - - hypothetical protein CICLE_v10001869mg [Citrus clementina]
14 Hb_003253_050 0.1382879182 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 3 [Jatropha curcas]
15 Hb_001486_030 0.1387356021 - - conserved hypothetical protein [Ricinus communis]
16 Hb_006831_040 0.1391143672 - - PREDICTED: enhancer of mRNA-decapping protein 4-like isoform X1 [Jatropha curcas]
17 Hb_000377_090 0.1395550403 rubber biosynthesis Gene Name: Acetyl-CoA acetyltransferase acetyl-CoA C-acetyltransferase [Hevea brasiliensis]
18 Hb_000252_200 0.1401358674 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000140_480 0.1402453002 - - PREDICTED: uncharacterized protein LOC105637350 [Jatropha curcas]
20 Hb_001761_130 0.1413005473 - - PREDICTED: uncharacterized protein LOC105646118 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_008147_070 Hb_008147_070 Hb_001021_080 Hb_001021_080 Hb_008147_070--Hb_001021_080 Hb_119494_010 Hb_119494_010 Hb_008147_070--Hb_119494_010 Hb_077562_030 Hb_077562_030 Hb_008147_070--Hb_077562_030 Hb_109002_020 Hb_109002_020 Hb_008147_070--Hb_109002_020 Hb_002400_410 Hb_002400_410 Hb_008147_070--Hb_002400_410 Hb_172632_110 Hb_172632_110 Hb_008147_070--Hb_172632_110 Hb_001021_080--Hb_172632_110 Hb_002391_210 Hb_002391_210 Hb_001021_080--Hb_002391_210 Hb_000739_100 Hb_000739_100 Hb_001021_080--Hb_000739_100 Hb_006831_040 Hb_006831_040 Hb_001021_080--Hb_006831_040 Hb_001157_090 Hb_001157_090 Hb_001021_080--Hb_001157_090 Hb_003253_050 Hb_003253_050 Hb_119494_010--Hb_003253_050 Hb_002005_100 Hb_002005_100 Hb_119494_010--Hb_002005_100 Hb_119494_010--Hb_002400_410 Hb_014894_010 Hb_014894_010 Hb_119494_010--Hb_014894_010 Hb_001214_090 Hb_001214_090 Hb_119494_010--Hb_001214_090 Hb_077562_030--Hb_172632_110 Hb_001761_130 Hb_001761_130 Hb_077562_030--Hb_001761_130 Hb_002477_090 Hb_002477_090 Hb_077562_030--Hb_002477_090 Hb_001232_010 Hb_001232_010 Hb_077562_030--Hb_001232_010 Hb_000684_290 Hb_000684_290 Hb_077562_030--Hb_000684_290 Hb_000175_540 Hb_000175_540 Hb_109002_020--Hb_000175_540 Hb_000504_070 Hb_000504_070 Hb_109002_020--Hb_000504_070 Hb_004064_010 Hb_004064_010 Hb_109002_020--Hb_004064_010 Hb_000103_270 Hb_000103_270 Hb_109002_020--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_109002_020--Hb_000621_020 Hb_003266_100 Hb_003266_100 Hb_109002_020--Hb_003266_100 Hb_003294_070 Hb_003294_070 Hb_002400_410--Hb_003294_070 Hb_007416_120 Hb_007416_120 Hb_002400_410--Hb_007416_120 Hb_002471_290 Hb_002471_290 Hb_002400_410--Hb_002471_290 Hb_119530_010 Hb_119530_010 Hb_002400_410--Hb_119530_010 Hb_009079_030 Hb_009079_030 Hb_002400_410--Hb_009079_030 Hb_000181_400 Hb_000181_400 Hb_002400_410--Hb_000181_400 Hb_172632_110--Hb_001761_130 Hb_172632_110--Hb_006831_040 Hb_010174_110 Hb_010174_110 Hb_172632_110--Hb_010174_110 Hb_172632_110--Hb_002391_210 Hb_000002_010 Hb_000002_010 Hb_172632_110--Hb_000002_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
13.5235 31.5444 7.29016 14.8747 19.2726 14.3778
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.5381 22.6534 27.9845 56.9441 14.8521

CAGE analysis