Hb_000621_020

Information

Type -
Description -
Location Contig621: 20845-25234
Sequence    

Annotation

kegg
ID pop:POPTR_0004s09820g
description POPTRDRAFT_758948; DARK INDUCIBLE 9 family protein
nr
ID XP_012077987.1
description PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
swissprot
ID Q9FZH5
description Mannose-6-phosphate isomerase 2 OS=Arabidopsis thaliana GN=PMI2 PE=1 SV=1
trembl
ID A0A067KMB9
description Mannose-6-phosphate isomerase OS=Jatropha curcas GN=JCGZ_12990 PE=3 SV=1
Gene Ontology
ID GO:0004476
description mannose-6-phosphate isomerase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51506: 21027-25195
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000621_020 0.0 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
2 Hb_003266_100 0.1018229834 - - Isomerase protein [Gossypium arboreum]
3 Hb_004064_010 0.1028977567 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
4 Hb_105602_010 0.1033374865 - - Ketose-bisphosphate aldolase class-II family protein isoform 5 [Theobroma cacao]
5 Hb_109002_020 0.1074261939 - - PREDICTED: CTP synthase-like [Jatropha curcas]
6 Hb_004079_080 0.108630105 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
7 Hb_000103_270 0.1119863398 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
8 Hb_002631_080 0.1123372433 - - glyceraldehyde 3-phosphate dehydrogenase, putative [Ricinus communis]
9 Hb_001332_040 0.1156176253 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
10 Hb_000096_160 0.1215128547 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
11 Hb_000181_050 0.1226544279 - - PREDICTED: uncharacterized protein LOC105637463 [Jatropha curcas]
12 Hb_009687_010 0.123562809 - - PREDICTED: protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1-like isoform X4 [Jatropha curcas]
13 Hb_003633_050 0.1289876901 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
14 Hb_001623_160 0.1322788896 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
15 Hb_016522_010 0.1362691677 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
16 Hb_002889_030 0.1364611739 - - PREDICTED: uncharacterized protein At3g49140 [Jatropha curcas]
17 Hb_002849_200 0.1366892848 - - hypothetical protein JCGZ_15712 [Jatropha curcas]
18 Hb_000210_120 0.1386065714 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
19 Hb_004429_090 0.1390988398 - - PREDICTED: ras GTPase-activating protein-binding protein 1-like isoform X1 [Jatropha curcas]
20 Hb_000015_030 0.1394721995 - - PREDICTED: THO complex subunit 4B-like [Jatropha curcas]

Gene co-expression network

sample Hb_000621_020 Hb_000621_020 Hb_003266_100 Hb_003266_100 Hb_000621_020--Hb_003266_100 Hb_004064_010 Hb_004064_010 Hb_000621_020--Hb_004064_010 Hb_105602_010 Hb_105602_010 Hb_000621_020--Hb_105602_010 Hb_109002_020 Hb_109002_020 Hb_000621_020--Hb_109002_020 Hb_004079_080 Hb_004079_080 Hb_000621_020--Hb_004079_080 Hb_000103_270 Hb_000103_270 Hb_000621_020--Hb_000103_270 Hb_003266_100--Hb_004064_010 Hb_016522_010 Hb_016522_010 Hb_003266_100--Hb_016522_010 Hb_000483_260 Hb_000483_260 Hb_003266_100--Hb_000483_260 Hb_003266_100--Hb_109002_020 Hb_000665_050 Hb_000665_050 Hb_003266_100--Hb_000665_050 Hb_004064_010--Hb_105602_010 Hb_004064_010--Hb_109002_020 Hb_001341_100 Hb_001341_100 Hb_004064_010--Hb_001341_100 Hb_001486_030 Hb_001486_030 Hb_004064_010--Hb_001486_030 Hb_009687_010 Hb_009687_010 Hb_105602_010--Hb_009687_010 Hb_105602_010--Hb_003266_100 Hb_001332_040 Hb_001332_040 Hb_105602_010--Hb_001332_040 Hb_105602_010--Hb_000103_270 Hb_000175_540 Hb_000175_540 Hb_109002_020--Hb_000175_540 Hb_000504_070 Hb_000504_070 Hb_109002_020--Hb_000504_070 Hb_109002_020--Hb_000103_270 Hb_001214_090 Hb_001214_090 Hb_004079_080--Hb_001214_090 Hb_001623_160 Hb_001623_160 Hb_004079_080--Hb_001623_160 Hb_001971_060 Hb_001971_060 Hb_004079_080--Hb_001971_060 Hb_004079_080--Hb_016522_010 Hb_100147_010 Hb_100147_010 Hb_004079_080--Hb_100147_010 Hb_000210_120 Hb_000210_120 Hb_000103_270--Hb_000210_120 Hb_000103_270--Hb_009687_010 Hb_000096_160 Hb_000096_160 Hb_000103_270--Hb_000096_160 Hb_005914_170 Hb_005914_170 Hb_000103_270--Hb_005914_170 Hb_006698_030 Hb_006698_030 Hb_000103_270--Hb_006698_030 Hb_003098_020 Hb_003098_020 Hb_000103_270--Hb_003098_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.37348 2.93433 2.12991 6.08899 2.55248 2.78392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.84851 6.62454 5.61822 12.035 1.68348

CAGE analysis