Hb_001971_060

Information

Type -
Description -
Location Contig1971: 98678-99292
Sequence    

Annotation

kegg
ID mus:103979239
description 66 kDa stress protein-like
nr
ID XP_011012516.1
description PREDICTED: 66 kDa stress protein-like [Populus euphratica]
swissprot
ID Q9W7F2
description WD repeat-containing protein 1-A OS=Xenopus laevis GN=wdr1-a PE=2 SV=2
trembl
ID W9RFI6
description 66 kDa stress protein OS=Morus notabilis GN=L484_017395 PE=4 SV=1
Gene Ontology
ID GO:0005829
description 66 kda stress protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001971_060 0.0 - - PREDICTED: 66 kDa stress protein-like [Populus euphratica]
2 Hb_000381_110 0.1013423861 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like isoform X2 [Jatropha curcas]
3 Hb_100147_010 0.11155511 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]
4 Hb_001623_160 0.1162753016 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
5 Hb_029385_010 0.1178643237 - - CTP synthase family protein [Populus trichocarpa]
6 Hb_004079_080 0.122300292 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
7 Hb_001728_140 0.1261993959 - - -
8 Hb_001214_090 0.1293844243 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
9 Hb_016522_010 0.1357235237 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
10 Hb_001221_020 0.1392058203 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
11 Hb_003266_100 0.1408904712 - - Isomerase protein [Gossypium arboreum]
12 Hb_000251_030 0.1414605188 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
13 Hb_000286_060 0.1418641623 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
14 Hb_000621_020 0.1434943702 - - PREDICTED: mannose-6-phosphate isomerase 1 [Jatropha curcas]
15 Hb_001332_040 0.1447011961 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
16 Hb_012760_040 0.1482169555 - - PREDICTED: aconitate hydratase 1 [Jatropha curcas]
17 Hb_000228_110 0.1496114339 - - unnamed protein product [Vitis vinifera]
18 Hb_004064_010 0.150405501 - - PREDICTED: uncharacterized protein LOC105133340 isoform X1 [Populus euphratica]
19 Hb_000548_070 0.1523390677 desease resistance Gene Name: Synthase_beta RecName: Full=ATP synthase subunit beta, mitochondrial; Flags: Precursor [Hevea brasiliensis]
20 Hb_001085_240 0.1537393365 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001971_060 Hb_001971_060 Hb_000381_110 Hb_000381_110 Hb_001971_060--Hb_000381_110 Hb_100147_010 Hb_100147_010 Hb_001971_060--Hb_100147_010 Hb_001623_160 Hb_001623_160 Hb_001971_060--Hb_001623_160 Hb_029385_010 Hb_029385_010 Hb_001971_060--Hb_029385_010 Hb_004079_080 Hb_004079_080 Hb_001971_060--Hb_004079_080 Hb_001728_140 Hb_001728_140 Hb_001971_060--Hb_001728_140 Hb_000381_110--Hb_100147_010 Hb_000025_190 Hb_000025_190 Hb_000381_110--Hb_000025_190 Hb_000251_030 Hb_000251_030 Hb_000381_110--Hb_000251_030 Hb_001221_020 Hb_001221_020 Hb_000381_110--Hb_001221_020 Hb_002631_010 Hb_002631_010 Hb_000381_110--Hb_002631_010 Hb_100147_010--Hb_000251_030 Hb_100147_010--Hb_029385_010 Hb_001510_020 Hb_001510_020 Hb_100147_010--Hb_001510_020 Hb_100147_010--Hb_001623_160 Hb_001214_090 Hb_001214_090 Hb_001623_160--Hb_001214_090 Hb_001623_160--Hb_000381_110 Hb_003038_140 Hb_003038_140 Hb_001623_160--Hb_003038_140 Hb_001623_160--Hb_004079_080 Hb_001332_040 Hb_001332_040 Hb_001623_160--Hb_001332_040 Hb_029385_010--Hb_001728_140 Hb_029385_010--Hb_001510_020 Hb_029385_010--Hb_000251_030 Hb_029385_010--Hb_000381_110 Hb_000621_020 Hb_000621_020 Hb_004079_080--Hb_000621_020 Hb_004079_080--Hb_001214_090 Hb_016522_010 Hb_016522_010 Hb_004079_080--Hb_016522_010 Hb_004079_080--Hb_100147_010 Hb_000548_070 Hb_000548_070 Hb_001728_140--Hb_000548_070 Hb_009615_060 Hb_009615_060 Hb_001728_140--Hb_009615_060 Hb_001493_150 Hb_001493_150 Hb_001728_140--Hb_001493_150 Hb_001728_140--Hb_000251_030 Hb_001728_140--Hb_001510_020 Hb_002477_290 Hb_002477_290 Hb_001728_140--Hb_002477_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.680323 1.02249 1.76213 3.14413 0.769831 1.13892
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.71031 2.39964 4.11166 6.63025 1.99831

CAGE analysis