Hb_003038_140

Information

Type -
Description -
Location Contig3038: 75883-79863
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa011346mg
description hypothetical protein
nr
ID AFP74895.1
description soluble inorganic pyrophosphatase [Hevea brasiliensis]
swissprot
ID Q0DYB1
description Soluble inorganic pyrophosphatase OS=Oryza sativa subsp. japonica GN=IPP PE=2 SV=1
trembl
ID S4SPV0
description Soluble inorganic pyrophosphatase OS=Hevea brasiliensis GN=SIP2 PE=2 SV=1
Gene Ontology
ID GO:0005737
description soluble inorganic pyrophosphatase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32040: 76000-79870
cDNA
(Sanger)
(ID:Location)		 039_E18.ab1: 76020-79379

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003038_140 0.0 - - soluble inorganic pyrophosphatase [Hevea brasiliensis]
2 Hb_001369_250 0.0995405711 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]
3 Hb_001726_110 0.1132483491 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 19 [Jatropha curcas]
4 Hb_001623_160 0.1144751499 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At2g33170 [Jatropha curcas]
5 Hb_001332_040 0.1193867198 - - PREDICTED: transcription initiation factor IIB [Fragaria vesca subsp. vesca]
6 Hb_002675_140 0.1200746438 - - PREDICTED: E3 ubiquitin-protein ligase At1g63170 [Jatropha curcas]
7 Hb_010174_150 0.1202540897 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_003266_100 0.1205754846 - - Isomerase protein [Gossypium arboreum]
9 Hb_000665_050 0.1210061836 - - PREDICTED: aberrant root formation protein 4 [Jatropha curcas]
10 Hb_000555_100 0.1227831201 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
11 Hb_005285_030 0.1245080445 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
12 Hb_000975_350 0.1275729499 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
13 Hb_000347_450 0.1286057312 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
14 Hb_000210_120 0.1288582842 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
15 Hb_073171_100 0.1345213274 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
16 Hb_016522_010 0.1350487916 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
17 Hb_001104_230 0.1372443551 - - PREDICTED: fructose-bisphosphate aldolase cytoplasmic isozyme [Jatropha curcas]
18 Hb_119494_010 0.1380305601 - - PREDICTED: box C/D snoRNA protein 1 [Jatropha curcas]
19 Hb_001214_090 0.1384801303 - - PREDICTED: acyl-coenzyme A oxidase 4, peroxisomal [Jatropha curcas]
20 Hb_000031_260 0.1389532283 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]

Gene co-expression network

sample Hb_003038_140 Hb_003038_140 Hb_001369_250 Hb_001369_250 Hb_003038_140--Hb_001369_250 Hb_001726_110 Hb_001726_110 Hb_003038_140--Hb_001726_110 Hb_001623_160 Hb_001623_160 Hb_003038_140--Hb_001623_160 Hb_001332_040 Hb_001332_040 Hb_003038_140--Hb_001332_040 Hb_002675_140 Hb_002675_140 Hb_003038_140--Hb_002675_140 Hb_010174_150 Hb_010174_150 Hb_003038_140--Hb_010174_150 Hb_001369_250--Hb_002675_140 Hb_001369_250--Hb_010174_150 Hb_000555_100 Hb_000555_100 Hb_001369_250--Hb_000555_100 Hb_010560_050 Hb_010560_050 Hb_001369_250--Hb_010560_050 Hb_002357_060 Hb_002357_060 Hb_001369_250--Hb_002357_060 Hb_000665_050 Hb_000665_050 Hb_001369_250--Hb_000665_050 Hb_005489_140 Hb_005489_140 Hb_001726_110--Hb_005489_140 Hb_000144_120 Hb_000144_120 Hb_001726_110--Hb_000144_120 Hb_082741_010 Hb_082741_010 Hb_001726_110--Hb_082741_010 Hb_001019_050 Hb_001019_050 Hb_001726_110--Hb_001019_050 Hb_007441_280 Hb_007441_280 Hb_001726_110--Hb_007441_280 Hb_001214_090 Hb_001214_090 Hb_001623_160--Hb_001214_090 Hb_000381_110 Hb_000381_110 Hb_001623_160--Hb_000381_110 Hb_001971_060 Hb_001971_060 Hb_001623_160--Hb_001971_060 Hb_004079_080 Hb_004079_080 Hb_001623_160--Hb_004079_080 Hb_001623_160--Hb_001332_040 Hb_000286_060 Hb_000286_060 Hb_001332_040--Hb_000286_060 Hb_003266_100 Hb_003266_100 Hb_001332_040--Hb_003266_100 Hb_016522_010 Hb_016522_010 Hb_001332_040--Hb_016522_010 Hb_000103_270 Hb_000103_270 Hb_001332_040--Hb_000103_270 Hb_000621_020 Hb_000621_020 Hb_001332_040--Hb_000621_020 Hb_004429_090 Hb_004429_090 Hb_001332_040--Hb_004429_090 Hb_000034_070 Hb_000034_070 Hb_002675_140--Hb_000034_070 Hb_001085_240 Hb_001085_240 Hb_002675_140--Hb_001085_240 Hb_003633_050 Hb_003633_050 Hb_002675_140--Hb_003633_050 Hb_001104_100 Hb_001104_100 Hb_002675_140--Hb_001104_100 Hb_000181_050 Hb_000181_050 Hb_002675_140--Hb_000181_050 Hb_010174_150--Hb_002357_060 Hb_000347_450 Hb_000347_450 Hb_010174_150--Hb_000347_450 Hb_000227_070 Hb_000227_070 Hb_010174_150--Hb_000227_070 Hb_000012_410 Hb_000012_410 Hb_010174_150--Hb_000012_410 Hb_000210_120 Hb_000210_120 Hb_010174_150--Hb_000210_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.8617 48.1932 31.6752 65.4793 11.7846 21.5872
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.3748 52.3438 38.4699 105.901 27.1469

CAGE analysis