Hb_000227_070

Information

Type -
Description -
Location Contig227: 42794-47553
Sequence    

Annotation

kegg
ID rcu:RCOM_0913490
description hypothetical protein
nr
ID XP_012069542.1
description PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
swissprot
ID F6HDM2
description ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Vitis vinifera GN=VIT_05s0020g02800 PE=3 SV=1
trembl
ID B9RTW2
description ATP-dependent (S)-NAD(P)H-hydrate dehydratase OS=Ricinus communis GN=RCOM_0913490 PE=3 SV=1
Gene Ontology
ID GO:0005524
description atp-dependent -nad h-hydrate dehydratase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23587: 42857-45992
cDNA
(Sanger)
(ID:Location)		 006_F09r.ab1: 46239-47448

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000227_070 0.0 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
2 Hb_000510_240 0.0645973446 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
3 Hb_016522_010 0.0900542224 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
4 Hb_010174_150 0.0948815936 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_001085_240 0.1010955902 - - PREDICTED: probable calcium-binding protein CML22 isoform X1 [Jatropha curcas]
6 Hb_000096_160 0.1020580061 transcription factor TF Family: MYB-related PREDICTED: telomere repeat-binding factor 2 [Jatropha curcas]
7 Hb_179924_010 0.1056961786 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
8 Hb_007383_020 0.1057358827 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000012_410 0.1078186216 - - PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
10 Hb_002357_060 0.1090637498 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
11 Hb_152371_010 0.1093035751 - - RNA-binding KH domain-containing protein [Theobroma cacao]
12 Hb_001318_050 0.1097431084 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
13 Hb_000210_120 0.1098332363 - - PREDICTED: uncharacterized protein LOC105635829 isoform X1 [Jatropha curcas]
14 Hb_003633_050 0.1098537914 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
15 Hb_000286_060 0.1112077004 - - PREDICTED: uncharacterized protein LOC105633357 [Jatropha curcas]
16 Hb_000103_270 0.1155785881 - - PREDICTED: 1,2-dihydroxy-3-keto-5-methylthiopentene dioxygenase 2 [Fragaria vesca subsp. vesca]
17 Hb_000159_120 0.1157848407 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
18 Hb_000286_200 0.1159237119 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
19 Hb_000228_110 0.1165371749 - - unnamed protein product [Vitis vinifera]
20 Hb_001369_250 0.1166432824 - - PREDICTED: uncharacterized protein LOC105646469 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000227_070 Hb_000227_070 Hb_000510_240 Hb_000510_240 Hb_000227_070--Hb_000510_240 Hb_016522_010 Hb_016522_010 Hb_000227_070--Hb_016522_010 Hb_010174_150 Hb_010174_150 Hb_000227_070--Hb_010174_150 Hb_001085_240 Hb_001085_240 Hb_000227_070--Hb_001085_240 Hb_000096_160 Hb_000096_160 Hb_000227_070--Hb_000096_160 Hb_179924_010 Hb_179924_010 Hb_000227_070--Hb_179924_010 Hb_000510_240--Hb_016522_010 Hb_000210_120 Hb_000210_120 Hb_000510_240--Hb_000210_120 Hb_002193_030 Hb_002193_030 Hb_000510_240--Hb_002193_030 Hb_000103_270 Hb_000103_270 Hb_000510_240--Hb_000103_270 Hb_005914_170 Hb_005914_170 Hb_000510_240--Hb_005914_170 Hb_001414_030 Hb_001414_030 Hb_016522_010--Hb_001414_030 Hb_001214_090 Hb_001214_090 Hb_016522_010--Hb_001214_090 Hb_000228_110 Hb_000228_110 Hb_016522_010--Hb_000228_110 Hb_016522_010--Hb_000210_120 Hb_002357_060 Hb_002357_060 Hb_010174_150--Hb_002357_060 Hb_001369_250 Hb_001369_250 Hb_010174_150--Hb_001369_250 Hb_000347_450 Hb_000347_450 Hb_010174_150--Hb_000347_450 Hb_000012_410 Hb_000012_410 Hb_010174_150--Hb_000012_410 Hb_010174_150--Hb_000210_120 Hb_003633_050 Hb_003633_050 Hb_001085_240--Hb_003633_050 Hb_001085_240--Hb_000096_160 Hb_000094_210 Hb_000094_210 Hb_001085_240--Hb_000094_210 Hb_001085_240--Hb_000228_110 Hb_002675_140 Hb_002675_140 Hb_001085_240--Hb_002675_140 Hb_001085_240--Hb_005914_170 Hb_000096_160--Hb_003633_050 Hb_000096_160--Hb_005914_170 Hb_000096_160--Hb_000228_110 Hb_001157_110 Hb_001157_110 Hb_000096_160--Hb_001157_110 Hb_000096_160--Hb_000103_270 Hb_000159_120 Hb_000159_120 Hb_179924_010--Hb_000159_120 Hb_001731_030 Hb_001731_030 Hb_179924_010--Hb_001731_030 Hb_012022_080 Hb_012022_080 Hb_179924_010--Hb_012022_080 Hb_004586_350 Hb_004586_350 Hb_179924_010--Hb_004586_350 Hb_019053_030 Hb_019053_030 Hb_179924_010--Hb_019053_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.80353 2.70744 2.2475 6.15211 1.95296 3.91661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.51571 6.11123 3.58372 10.9566 5.95319

CAGE analysis