Hb_000012_410

Information

Type -
Description -
Location Contig12: 615395-620831
Sequence    

Annotation

kegg
ID rcu:RCOM_0797630
description histone deacetylase, putative
nr
ID XP_012077298.1
description PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
swissprot
ID Q944K3
description Histone deacetylase 2 OS=Arabidopsis thaliana GN=HDA2 PE=2 SV=2
trembl
ID A0A067KDA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07678 PE=4 SV=1
Gene Ontology
ID GO:0017136
description histone deacetylase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06035: 615443-620009
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000012_410 0.0 - - PREDICTED: histone deacetylase 2 isoform X1 [Jatropha curcas]
2 Hb_010174_150 0.0984949052 - - ubiquitin-protein ligase, putative [Ricinus communis]
3 Hb_000227_070 0.1078186216 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
4 Hb_000159_120 0.1184958372 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
5 Hb_016522_010 0.1314751435 - - PREDICTED: short-chain dehydrogenase/reductase 2b-like [Jatropha curcas]
6 Hb_004880_150 0.1327962041 - - PREDICTED: uncharacterized protein LOC105632834 [Jatropha curcas]
7 Hb_002534_120 0.1329300334 - - PREDICTED: protein DCL, chloroplastic [Jatropha curcas]
8 Hb_005648_010 0.1336077639 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
9 Hb_002811_100 0.1340258457 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
10 Hb_001019_050 0.1358338396 - - PREDICTED: importin-13 [Jatropha curcas]
11 Hb_000347_450 0.1375679226 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
12 Hb_002357_060 0.1378191771 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
13 Hb_000510_240 0.1380587935 desease resistance Gene Name: PRK ATP binding protein, putative [Ricinus communis]
14 Hb_001221_020 0.1394369279 - - PREDICTED: probable aspartyl aminopeptidase [Jatropha curcas]
15 Hb_042474_010 0.139637978 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
16 Hb_001318_050 0.1406887656 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
17 Hb_000286_200 0.1424977811 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X2 [Jatropha curcas]
18 Hb_000406_150 0.1433715859 - - sodium/hydrogen exchanger, putative [Ricinus communis]
19 Hb_012022_080 0.1441313585 - - ubiquitin-protein ligase, putative [Ricinus communis]
20 Hb_017491_020 0.1448979693 - - hypothetical protein B456_011G056700 [Gossypium raimondii]

Gene co-expression network

sample Hb_000012_410 Hb_000012_410 Hb_010174_150 Hb_010174_150 Hb_000012_410--Hb_010174_150 Hb_000227_070 Hb_000227_070 Hb_000012_410--Hb_000227_070 Hb_000159_120 Hb_000159_120 Hb_000012_410--Hb_000159_120 Hb_016522_010 Hb_016522_010 Hb_000012_410--Hb_016522_010 Hb_004880_150 Hb_004880_150 Hb_000012_410--Hb_004880_150 Hb_002534_120 Hb_002534_120 Hb_000012_410--Hb_002534_120 Hb_002357_060 Hb_002357_060 Hb_010174_150--Hb_002357_060 Hb_001369_250 Hb_001369_250 Hb_010174_150--Hb_001369_250 Hb_000347_450 Hb_000347_450 Hb_010174_150--Hb_000347_450 Hb_010174_150--Hb_000227_070 Hb_000210_120 Hb_000210_120 Hb_010174_150--Hb_000210_120 Hb_000510_240 Hb_000510_240 Hb_000227_070--Hb_000510_240 Hb_000227_070--Hb_016522_010 Hb_001085_240 Hb_001085_240 Hb_000227_070--Hb_001085_240 Hb_000096_160 Hb_000096_160 Hb_000227_070--Hb_000096_160 Hb_179924_010 Hb_179924_010 Hb_000227_070--Hb_179924_010 Hb_012022_080 Hb_012022_080 Hb_000159_120--Hb_012022_080 Hb_008226_070 Hb_008226_070 Hb_000159_120--Hb_008226_070 Hb_003906_170 Hb_003906_170 Hb_000159_120--Hb_003906_170 Hb_001019_050 Hb_001019_050 Hb_000159_120--Hb_001019_050 Hb_001221_020 Hb_001221_020 Hb_000159_120--Hb_001221_020 Hb_107298_010 Hb_107298_010 Hb_000159_120--Hb_107298_010 Hb_001414_030 Hb_001414_030 Hb_016522_010--Hb_001414_030 Hb_001214_090 Hb_001214_090 Hb_016522_010--Hb_001214_090 Hb_016522_010--Hb_000510_240 Hb_000228_110 Hb_000228_110 Hb_016522_010--Hb_000228_110 Hb_016522_010--Hb_000210_120 Hb_004880_150--Hb_001221_020 Hb_003776_060 Hb_003776_060 Hb_004880_150--Hb_003776_060 Hb_002477_290 Hb_002477_290 Hb_004880_150--Hb_002477_290 Hb_002811_100 Hb_002811_100 Hb_004880_150--Hb_002811_100 Hb_000025_190 Hb_000025_190 Hb_004880_150--Hb_000025_190 Hb_005648_010 Hb_005648_010 Hb_004880_150--Hb_005648_010 Hb_000504_070 Hb_000504_070 Hb_002534_120--Hb_000504_070 Hb_002232_360 Hb_002232_360 Hb_002534_120--Hb_002232_360 Hb_001671_100 Hb_001671_100 Hb_002534_120--Hb_001671_100 Hb_000392_430 Hb_000392_430 Hb_002534_120--Hb_000392_430 Hb_002271_010 Hb_002271_010 Hb_002534_120--Hb_002271_010 Hb_007416_120 Hb_007416_120 Hb_002534_120--Hb_007416_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.7014 2.5565 2.16949 5.31297 1.81087 2.6069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.47329 6.17625 1.59122 9.55768 4.33761

CAGE analysis