Hb_179924_010

Information

Type -
Description -
Location Contig179924: 832-1681
Sequence    

Annotation

kegg
ID pop:POPTR_0013s14640g
description POPTRDRAFT_571830; hypothetical protein
nr
ID XP_011048496.1
description PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
swissprot
ID P0C7Q7
description Putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3 SV=1
trembl
ID B9I6I7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0013s14640g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17406: 1575-1690
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_179924_010 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
2 Hb_000159_120 0.0986398873 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
3 Hb_000227_070 0.1056961786 - - PREDICTED: ATP-dependent (S)-NAD(P)H-hydrate dehydratase isoform X2 [Jatropha curcas]
4 Hb_001731_030 0.1089380095 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A-like [Gossypium raimondii]
5 Hb_012022_080 0.1105884746 - - ubiquitin-protein ligase, putative [Ricinus communis]
6 Hb_004586_350 0.1180392729 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
7 Hb_019053_030 0.1196540959 - - PREDICTED: sulfite oxidase [Jatropha curcas]
8 Hb_001168_050 0.1211491379 - - hypothetical protein POPTR_0007s03190g [Populus trichocarpa]
9 Hb_002357_060 0.1222453265 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
10 Hb_084670_010 0.1250271693 - - PREDICTED: thiamine biosynthetic bifunctional enzyme TH1, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_179306_020 0.125238038 - - PREDICTED: uncharacterized protein LOC105634392 isoform X1 [Jatropha curcas]
12 Hb_025336_020 0.1254129616 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
13 Hb_119530_010 0.1255236898 - - -
14 Hb_011674_020 0.1258825185 - - PREDICTED: NEDD8-activating enzyme E1 regulatory subunit-like [Jatropha curcas]
15 Hb_002301_100 0.1274187512 - - hypothetical protein JCGZ_21479 [Jatropha curcas]
16 Hb_001452_210 0.1288181819 - - molybdopterin biosynthesis CNX1 protein [Arabidopsis thaliana]
17 Hb_002093_060 0.1290417795 - - phosphoprotein phosphatase, putative [Ricinus communis]
18 Hb_005648_010 0.1296419408 - - PREDICTED: malate dehydrogenase, glyoxysomal isoform X1 [Jatropha curcas]
19 Hb_007558_100 0.1303530326 - - PREDICTED: uncharacterized protein LOC105649092 isoform X2 [Jatropha curcas]
20 Hb_001019_050 0.1305434983 - - PREDICTED: importin-13 [Jatropha curcas]

Gene co-expression network

sample Hb_179924_010 Hb_179924_010 Hb_000159_120 Hb_000159_120 Hb_179924_010--Hb_000159_120 Hb_000227_070 Hb_000227_070 Hb_179924_010--Hb_000227_070 Hb_001731_030 Hb_001731_030 Hb_179924_010--Hb_001731_030 Hb_012022_080 Hb_012022_080 Hb_179924_010--Hb_012022_080 Hb_004586_350 Hb_004586_350 Hb_179924_010--Hb_004586_350 Hb_019053_030 Hb_019053_030 Hb_179924_010--Hb_019053_030 Hb_000159_120--Hb_012022_080 Hb_008226_070 Hb_008226_070 Hb_000159_120--Hb_008226_070 Hb_003906_170 Hb_003906_170 Hb_000159_120--Hb_003906_170 Hb_001019_050 Hb_001019_050 Hb_000159_120--Hb_001019_050 Hb_001221_020 Hb_001221_020 Hb_000159_120--Hb_001221_020 Hb_107298_010 Hb_107298_010 Hb_000159_120--Hb_107298_010 Hb_000510_240 Hb_000510_240 Hb_000227_070--Hb_000510_240 Hb_016522_010 Hb_016522_010 Hb_000227_070--Hb_016522_010 Hb_010174_150 Hb_010174_150 Hb_000227_070--Hb_010174_150 Hb_001085_240 Hb_001085_240 Hb_000227_070--Hb_001085_240 Hb_000096_160 Hb_000096_160 Hb_000227_070--Hb_000096_160 Hb_001493_150 Hb_001493_150 Hb_001731_030--Hb_001493_150 Hb_000808_170 Hb_000808_170 Hb_001731_030--Hb_000808_170 Hb_028960_030 Hb_028960_030 Hb_001731_030--Hb_028960_030 Hb_073171_100 Hb_073171_100 Hb_001731_030--Hb_073171_100 Hb_001731_030--Hb_000159_120 Hb_011224_160 Hb_011224_160 Hb_001731_030--Hb_011224_160 Hb_000190_090 Hb_000190_090 Hb_012022_080--Hb_000190_090 Hb_025336_020 Hb_025336_020 Hb_012022_080--Hb_025336_020 Hb_021576_010 Hb_021576_010 Hb_012022_080--Hb_021576_010 Hb_000327_250 Hb_000327_250 Hb_012022_080--Hb_000327_250 Hb_012022_080--Hb_011224_160 Hb_009079_030 Hb_009079_030 Hb_004586_350--Hb_009079_030 Hb_002477_090 Hb_002477_090 Hb_004586_350--Hb_002477_090 Hb_006198_120 Hb_006198_120 Hb_004586_350--Hb_006198_120 Hb_004586_350--Hb_025336_020 Hb_000920_300 Hb_000920_300 Hb_004586_350--Hb_000920_300 Hb_004586_350--Hb_012022_080 Hb_000228_110 Hb_000228_110 Hb_019053_030--Hb_000228_110 Hb_005147_030 Hb_005147_030 Hb_019053_030--Hb_005147_030 Hb_000031_120 Hb_000031_120 Hb_019053_030--Hb_000031_120 Hb_002889_030 Hb_002889_030 Hb_019053_030--Hb_002889_030 Hb_003747_020 Hb_003747_020 Hb_019053_030--Hb_003747_020 Hb_000181_050 Hb_000181_050 Hb_019053_030--Hb_000181_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.01001 6.01891 6.75552 11.4938 3.5449 9.91787
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.918 8.47291 4.22022 24.5805 13.1538

CAGE analysis