Hb_025336_020

Information

Type -
Description -
Location Contig25336: 20318-23623
Sequence    

Annotation

kegg
ID cam:101513938
description PP2A regulatory subunit TAP46-like
nr
ID XP_012080996.1
description PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
swissprot
ID Q8LDQ4
description PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2
trembl
ID A0A0D3AML4
description Uncharacterized protein OS=Brassica oleracea var. oleracea PE=4 SV=1
Gene Ontology
ID GO:0009966
description pp2a regulatory subunit tap46

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26479: 20423-22847 , PASA_asmbl_26480: 23278-23551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_025336_020 0.0 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
2 Hb_000088_270 0.0779537102 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
3 Hb_007423_050 0.0787473896 - - PREDICTED: cysteine-rich receptor-like protein kinase 3 [Jatropha curcas]
4 Hb_012022_080 0.0818342834 - - ubiquitin-protein ligase, putative [Ricinus communis]
5 Hb_001019_050 0.0847554017 - - PREDICTED: importin-13 [Jatropha curcas]
6 Hb_000008_420 0.0861151292 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
7 Hb_005489_140 0.0875025096 - - PREDICTED: maspardin [Jatropha curcas]
8 Hb_107298_010 0.0957331829 - - PREDICTED: E3 ubiquitin-protein ligase RHF2A isoform X2 [Jatropha curcas]
9 Hb_011224_160 0.0961762692 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
10 Hb_000159_120 0.1016018184 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
11 Hb_000347_450 0.103636512 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
12 Hb_000920_300 0.104073812 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
13 Hb_004586_350 0.1078059268 - - Phosphoribosylaminoimidazole-succinocarboxamide synthase [Morus notabilis]
14 Hb_003906_170 0.1089280231 - - alcohol dehydrogenase, putative [Ricinus communis]
15 Hb_006501_160 0.1094964775 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
16 Hb_082741_010 0.1130103531 - - PREDICTED: uncharacterized protein LOC105649930 [Jatropha curcas]
17 Hb_000327_250 0.1139697462 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
18 Hb_021576_010 0.1140966884 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
19 Hb_002046_010 0.1144006599 - - conserved hypothetical protein [Ricinus communis]
20 Hb_089140_040 0.1159145534 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]

Gene co-expression network

sample Hb_025336_020 Hb_025336_020 Hb_000088_270 Hb_000088_270 Hb_025336_020--Hb_000088_270 Hb_007423_050 Hb_007423_050 Hb_025336_020--Hb_007423_050 Hb_012022_080 Hb_012022_080 Hb_025336_020--Hb_012022_080 Hb_001019_050 Hb_001019_050 Hb_025336_020--Hb_001019_050 Hb_000008_420 Hb_000008_420 Hb_025336_020--Hb_000008_420 Hb_005489_140 Hb_005489_140 Hb_025336_020--Hb_005489_140 Hb_000088_270--Hb_001019_050 Hb_011224_160 Hb_011224_160 Hb_000088_270--Hb_011224_160 Hb_000347_450 Hb_000347_450 Hb_000088_270--Hb_000347_450 Hb_000088_270--Hb_000008_420 Hb_003777_290 Hb_003777_290 Hb_000088_270--Hb_003777_290 Hb_007423_050--Hb_000008_420 Hb_011671_270 Hb_011671_270 Hb_007423_050--Hb_011671_270 Hb_006637_070 Hb_006637_070 Hb_007423_050--Hb_006637_070 Hb_000690_150 Hb_000690_150 Hb_007423_050--Hb_000690_150 Hb_007423_050--Hb_000088_270 Hb_000190_090 Hb_000190_090 Hb_012022_080--Hb_000190_090 Hb_000159_120 Hb_000159_120 Hb_012022_080--Hb_000159_120 Hb_021576_010 Hb_021576_010 Hb_012022_080--Hb_021576_010 Hb_000327_250 Hb_000327_250 Hb_012022_080--Hb_000327_250 Hb_012022_080--Hb_011224_160 Hb_001019_050--Hb_000347_450 Hb_001019_050--Hb_000159_120 Hb_107298_010 Hb_107298_010 Hb_001019_050--Hb_107298_010 Hb_001019_050--Hb_005489_140 Hb_006588_060 Hb_006588_060 Hb_000008_420--Hb_006588_060 Hb_012092_050 Hb_012092_050 Hb_000008_420--Hb_012092_050 Hb_007257_060 Hb_007257_060 Hb_000008_420--Hb_007257_060 Hb_000920_300 Hb_000920_300 Hb_000008_420--Hb_000920_300 Hb_005489_140--Hb_107298_010 Hb_089140_040 Hb_089140_040 Hb_005489_140--Hb_089140_040 Hb_083799_010 Hb_083799_010 Hb_005489_140--Hb_083799_010 Hb_008790_020 Hb_008790_020 Hb_005489_140--Hb_008790_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.75963 4.1287 2.87031 4.40128 1.88501 2.05678
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.09347 3.3492 1.33567 8.28008 3.36982

CAGE analysis