Hb_000008_420

Information

Type -
Description -
Location Contig8: 495187-504260
Sequence    

Annotation

kegg
ID rcu:RCOM_0154490
description protein binding protein, putative
nr
ID XP_012064832.1
description PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
swissprot
ID Q499R4
description YrdC domain-containing protein, mitochondrial OS=Rattus norvegicus GN=Yrdc PE=2 SV=1
trembl
ID A0A067L6K7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05529 PE=4 SV=1
Gene Ontology
ID GO:0003725
description protein binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58705: 494995-498190 , PASA_asmbl_58706: 498686-503833 , PASA_asmbl_58707: 499170-499352 , PASA_asmbl_58708: 499875-500129 , PASA_asmbl_58709: 502263-502550
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000008_420 0.0 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
2 Hb_000088_270 0.0725693238 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
3 Hb_006588_060 0.0742433519 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]
4 Hb_012092_050 0.0753773599 - - PREDICTED: polypyrimidine tract-binding protein homolog 1 isoform X1 [Jatropha curcas]
5 Hb_007257_060 0.0786404127 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
6 Hb_007423_050 0.0788279761 - - PREDICTED: cysteine-rich receptor-like protein kinase 3 [Jatropha curcas]
7 Hb_000920_300 0.0844989311 - - PREDICTED: flowering time control protein FY isoform X2 [Jatropha curcas]
8 Hb_025336_020 0.0861151292 - - PREDICTED: PP2A regulatory subunit TAP46 [Jatropha curcas]
9 Hb_050847_050 0.0870022508 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
10 Hb_000796_240 0.0925249657 - - -
11 Hb_089140_040 0.0942406068 - - PREDICTED: uncharacterized protein LOC105637966 [Jatropha curcas]
12 Hb_000189_600 0.0944416428 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
13 Hb_000120_820 0.0962554665 - - dihydrodipicolinate synthase, putative [Ricinus communis]
14 Hb_109484_010 0.0972489307 - - PREDICTED: INO80 complex subunit D-like [Jatropha curcas]
15 Hb_000676_260 0.0992164179 - - PREDICTED: uncharacterized protein LOC105639070 [Jatropha curcas]
16 Hb_008114_040 0.0996866373 - - Fanconi anemia group D2 [Gossypium arboreum]
17 Hb_000402_150 0.0998231846 - - PREDICTED: uncharacterized protein LOC105644650 isoform X2 [Jatropha curcas]
18 Hb_004781_010 0.0998851902 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
19 Hb_007382_120 0.1000665204 - - PREDICTED: delta(3,5)-Delta(2,4)-dienoyl-CoA isomerase, mitochondrial [Jatropha curcas]
20 Hb_007472_070 0.1000924838 - - cir, putative [Ricinus communis]

Gene co-expression network

sample Hb_000008_420 Hb_000008_420 Hb_000088_270 Hb_000088_270 Hb_000008_420--Hb_000088_270 Hb_006588_060 Hb_006588_060 Hb_000008_420--Hb_006588_060 Hb_012092_050 Hb_012092_050 Hb_000008_420--Hb_012092_050 Hb_007257_060 Hb_007257_060 Hb_000008_420--Hb_007257_060 Hb_007423_050 Hb_007423_050 Hb_000008_420--Hb_007423_050 Hb_000920_300 Hb_000920_300 Hb_000008_420--Hb_000920_300 Hb_001019_050 Hb_001019_050 Hb_000088_270--Hb_001019_050 Hb_011224_160 Hb_011224_160 Hb_000088_270--Hb_011224_160 Hb_000347_450 Hb_000347_450 Hb_000088_270--Hb_000347_450 Hb_025336_020 Hb_025336_020 Hb_000088_270--Hb_025336_020 Hb_003777_290 Hb_003777_290 Hb_000088_270--Hb_003777_290 Hb_001300_280 Hb_001300_280 Hb_006588_060--Hb_001300_280 Hb_008114_040 Hb_008114_040 Hb_006588_060--Hb_008114_040 Hb_010775_030 Hb_010775_030 Hb_006588_060--Hb_010775_030 Hb_006588_060--Hb_012092_050 Hb_050847_050 Hb_050847_050 Hb_006588_060--Hb_050847_050 Hb_012092_050--Hb_007257_060 Hb_002014_010 Hb_002014_010 Hb_012092_050--Hb_002014_010 Hb_012092_050--Hb_001300_280 Hb_001635_110 Hb_001635_110 Hb_012092_050--Hb_001635_110 Hb_004109_320 Hb_004109_320 Hb_012092_050--Hb_004109_320 Hb_007257_060--Hb_001300_280 Hb_001357_310 Hb_001357_310 Hb_007257_060--Hb_001357_310 Hb_007257_060--Hb_006588_060 Hb_000402_150 Hb_000402_150 Hb_007257_060--Hb_000402_150 Hb_007423_050--Hb_025336_020 Hb_011671_270 Hb_011671_270 Hb_007423_050--Hb_011671_270 Hb_006637_070 Hb_006637_070 Hb_007423_050--Hb_006637_070 Hb_000690_150 Hb_000690_150 Hb_007423_050--Hb_000690_150 Hb_007423_050--Hb_000088_270 Hb_003913_070 Hb_003913_070 Hb_000920_300--Hb_003913_070 Hb_002456_010 Hb_002456_010 Hb_000920_300--Hb_002456_010 Hb_002641_030 Hb_002641_030 Hb_000920_300--Hb_002641_030 Hb_006520_040 Hb_006520_040 Hb_000920_300--Hb_006520_040 Hb_004934_050 Hb_004934_050 Hb_000920_300--Hb_004934_050 Hb_001671_100 Hb_001671_100 Hb_000920_300--Hb_001671_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1921 18.6388 14.3139 15.0109 8.45791 8.41323
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.8299 15.0617 5.31501 22.0099 11.2416

CAGE analysis