Hb_000347_450

Information

Type -
Description -
Location Contig347: 441909-448784
Sequence    

Annotation

kegg
ID vvi:100264494
description tRNA(His) guanylyltransferase 1-like
nr
ID XP_012075263.1
description PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
swissprot
ID F4IRQ5
description tRNA(His) guanylyltransferase 1 OS=Arabidopsis thaliana GN=THG1 PE=1 SV=1
trembl
ID A0A067KSN6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09434 PE=4 SV=1
Gene Ontology
ID GO:0000287
description truncated icarus1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36246: 442043-443647 , PASA_asmbl_36247: 444742-445752 , PASA_asmbl_36248: 446537-448691 , PASA_asmbl_36249: 446562-446951
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000347_450 0.0 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
2 Hb_011224_160 0.0621194274 transcription factor, rubber biosynthesis TF Family: HSF, Gene Name: Farnesyl diphosphate synthase PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
3 Hb_000088_270 0.0690977585 - - PREDICTED: uncharacterized protein LOC105637003 [Jatropha curcas]
4 Hb_000684_040 0.075943096 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
5 Hb_050847_050 0.084741579 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
6 Hb_010775_040 0.086525147 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
7 Hb_000183_090 0.0873509088 - - PREDICTED: protein EARLY FLOWERING 3 isoform X2 [Jatropha curcas]
8 Hb_010174_150 0.090559534 - - ubiquitin-protein ligase, putative [Ricinus communis]
9 Hb_001019_050 0.0915844993 - - PREDICTED: importin-13 [Jatropha curcas]
10 Hb_002357_060 0.0917878103 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
11 Hb_073171_100 0.0918699701 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
12 Hb_002811_100 0.0934969257 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
13 Hb_006501_160 0.0957688074 - - PREDICTED: hexokinase-1-like [Jatropha curcas]
14 Hb_004781_010 0.0967384619 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
15 Hb_042474_010 0.1001198133 - - PREDICTED: adenylyltransferase and sulfurtransferase MOCS3 [Jatropha curcas]
16 Hb_007257_060 0.1006284078 - - PREDICTED: omega-amidase,chloroplastic [Jatropha curcas]
17 Hb_000008_420 0.1009916699 - - PREDICTED: uncharacterized protein LOC105628103 isoform X1 [Jatropha curcas]
18 Hb_000363_190 0.1021152095 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
19 Hb_000555_100 0.1031070859 - - hypothetical protein JCGZ_14689 [Jatropha curcas]
20 Hb_000510_340 0.1036169661 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]

Gene co-expression network

sample Hb_000347_450 Hb_000347_450 Hb_011224_160 Hb_011224_160 Hb_000347_450--Hb_011224_160 Hb_000088_270 Hb_000088_270 Hb_000347_450--Hb_000088_270 Hb_000684_040 Hb_000684_040 Hb_000347_450--Hb_000684_040 Hb_050847_050 Hb_050847_050 Hb_000347_450--Hb_050847_050 Hb_010775_040 Hb_010775_040 Hb_000347_450--Hb_010775_040 Hb_000183_090 Hb_000183_090 Hb_000347_450--Hb_000183_090 Hb_000510_340 Hb_000510_340 Hb_011224_160--Hb_000510_340 Hb_011224_160--Hb_000088_270 Hb_003777_290 Hb_003777_290 Hb_011224_160--Hb_003777_290 Hb_000363_190 Hb_000363_190 Hb_011224_160--Hb_000363_190 Hb_021576_010 Hb_021576_010 Hb_011224_160--Hb_021576_010 Hb_001019_050 Hb_001019_050 Hb_000088_270--Hb_001019_050 Hb_000008_420 Hb_000008_420 Hb_000088_270--Hb_000008_420 Hb_025336_020 Hb_025336_020 Hb_000088_270--Hb_025336_020 Hb_000088_270--Hb_003777_290 Hb_000490_060 Hb_000490_060 Hb_000684_040--Hb_000490_060 Hb_002471_090 Hb_002471_090 Hb_000684_040--Hb_002471_090 Hb_000723_230 Hb_000723_230 Hb_000684_040--Hb_000723_230 Hb_000684_040--Hb_010775_040 Hb_002477_290 Hb_002477_290 Hb_000684_040--Hb_002477_290 Hb_006588_060 Hb_006588_060 Hb_050847_050--Hb_006588_060 Hb_000000_230 Hb_000000_230 Hb_050847_050--Hb_000000_230 Hb_050847_050--Hb_002471_090 Hb_004781_010 Hb_004781_010 Hb_050847_050--Hb_004781_010 Hb_050847_050--Hb_000510_340 Hb_007257_060 Hb_007257_060 Hb_050847_050--Hb_007257_060 Hb_023771_010 Hb_023771_010 Hb_010775_040--Hb_023771_010 Hb_010775_040--Hb_004781_010 Hb_000917_230 Hb_000917_230 Hb_010775_040--Hb_000917_230 Hb_002811_100 Hb_002811_100 Hb_010775_040--Hb_002811_100 Hb_000173_280 Hb_000173_280 Hb_000183_090--Hb_000173_280 Hb_001221_430 Hb_001221_430 Hb_000183_090--Hb_001221_430 Hb_000183_090--Hb_050847_050 Hb_000183_090--Hb_002811_100 Hb_000183_090--Hb_023771_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.30337 3.73389 2.73344 3.57197 1.5255 1.41946
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.01822 4.04652 1.97838 5.89964 3.3101

CAGE analysis