Hb_023771_010

Information

Type -
Description -
Location Contig23771: 6668-13991
Sequence    

Annotation

kegg
ID rcu:RCOM_0306990
description basic helix-loop-helix-containing protein, putative
nr
ID XP_002533696.1
description basic helix-loop-helix-containing protein, putative [Ricinus communis]
swissprot
ID P0C7P8
description Transcription factor EMB1444 OS=Arabidopsis thaliana GN=EMB1444 PE=2 SV=1
trembl
ID B9T627
description Basic helix-loop-helix-containing protein, putative OS=Ricinus communis GN=RCOM_0306990 PE=4 SV=1
Gene Ontology
ID GO:0005488
description basic helix-loop-helix dna-binding superfamily isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24975: 6739-13285 , PASA_asmbl_24976: 6726-13070
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023771_010 0.0 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
2 Hb_010775_040 0.0640977201 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
3 Hb_000049_210 0.070127466 - - PREDICTED: uncharacterized protein LOC105644460 [Jatropha curcas]
4 Hb_000173_470 0.0826370516 - - PREDICTED: BSD domain-containing protein 1 [Jatropha curcas]
5 Hb_019863_070 0.0836798541 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
6 Hb_011218_090 0.0878267202 - - PREDICTED: autophagy-related protein 18a [Jatropha curcas]
7 Hb_002456_010 0.0881461759 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
8 Hb_001716_040 0.0886999778 - - ribonuclease p/mrp subunit, putative [Ricinus communis]
9 Hb_000173_280 0.0888938829 - - Speckle-type POZ protein, putative [Ricinus communis]
10 Hb_001221_430 0.0890021411 - - PREDICTED: F-box/LRR-repeat protein At5g63520 isoform X2 [Jatropha curcas]
11 Hb_149985_010 0.0895146671 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
12 Hb_000521_240 0.0901541465 - - PREDICTED: uncharacterized protein LOC105650339 isoform X2 [Jatropha curcas]
13 Hb_000917_230 0.0903669127 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
14 Hb_007218_120 0.0903828446 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
15 Hb_001671_100 0.0909593145 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
16 Hb_007416_120 0.0926614997 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
17 Hb_000574_450 0.0926914673 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
18 Hb_003228_110 0.0927526432 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
19 Hb_008770_030 0.0929713651 - - PREDICTED: MACPF domain-containing protein At4g24290-like [Jatropha curcas]
20 Hb_003847_030 0.0931355694 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15010, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_023771_010 Hb_023771_010 Hb_010775_040 Hb_010775_040 Hb_023771_010--Hb_010775_040 Hb_000049_210 Hb_000049_210 Hb_023771_010--Hb_000049_210 Hb_000173_470 Hb_000173_470 Hb_023771_010--Hb_000173_470 Hb_019863_070 Hb_019863_070 Hb_023771_010--Hb_019863_070 Hb_011218_090 Hb_011218_090 Hb_023771_010--Hb_011218_090 Hb_002456_010 Hb_002456_010 Hb_023771_010--Hb_002456_010 Hb_004781_010 Hb_004781_010 Hb_010775_040--Hb_004781_010 Hb_000917_230 Hb_000917_230 Hb_010775_040--Hb_000917_230 Hb_002811_100 Hb_002811_100 Hb_010775_040--Hb_002811_100 Hb_000347_450 Hb_000347_450 Hb_010775_040--Hb_000347_450 Hb_000684_040 Hb_000684_040 Hb_010775_040--Hb_000684_040 Hb_005054_110 Hb_005054_110 Hb_000049_210--Hb_005054_110 Hb_000710_060 Hb_000710_060 Hb_000049_210--Hb_000710_060 Hb_149985_010 Hb_149985_010 Hb_000049_210--Hb_149985_010 Hb_000890_150 Hb_000890_150 Hb_000049_210--Hb_000890_150 Hb_008725_230 Hb_008725_230 Hb_000049_210--Hb_008725_230 Hb_003847_030 Hb_003847_030 Hb_000049_210--Hb_003847_030 Hb_000465_300 Hb_000465_300 Hb_000173_470--Hb_000465_300 Hb_003607_130 Hb_003607_130 Hb_000173_470--Hb_003607_130 Hb_000753_230 Hb_000753_230 Hb_000173_470--Hb_000753_230 Hb_000749_050 Hb_000749_050 Hb_000173_470--Hb_000749_050 Hb_000173_470--Hb_000890_150 Hb_002818_030 Hb_002818_030 Hb_019863_070--Hb_002818_030 Hb_003849_110 Hb_003849_110 Hb_019863_070--Hb_003849_110 Hb_000868_090 Hb_000868_090 Hb_019863_070--Hb_000868_090 Hb_019863_070--Hb_005054_110 Hb_000258_160 Hb_000258_160 Hb_019863_070--Hb_000258_160 Hb_015807_150 Hb_015807_150 Hb_019863_070--Hb_015807_150 Hb_000359_060 Hb_000359_060 Hb_011218_090--Hb_000359_060 Hb_011218_090--Hb_000890_150 Hb_011218_090--Hb_000049_210 Hb_004157_050 Hb_004157_050 Hb_011218_090--Hb_004157_050 Hb_011218_090--Hb_149985_010 Hb_000029_140 Hb_000029_140 Hb_011218_090--Hb_000029_140 Hb_000111_290 Hb_000111_290 Hb_002456_010--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_002456_010--Hb_001876_050 Hb_000614_240 Hb_000614_240 Hb_002456_010--Hb_000614_240 Hb_004324_130 Hb_004324_130 Hb_002456_010--Hb_004324_130 Hb_003544_060 Hb_003544_060 Hb_002456_010--Hb_003544_060 Hb_000920_300 Hb_000920_300 Hb_002456_010--Hb_000920_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.8321 30.4673 16.8745 27.673 15.2425 13.3528
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3451 34.2831 30.7185 37.4378 25.8792

CAGE analysis