Hb_010775_040

Information

Type -
Description -
Location Contig10775: 56590-57834
Sequence    

Annotation

kegg
ID tcc:TCM_022075
description Hydroxyproline-rich glycoprotein family protein
nr
ID XP_012085966.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
swissprot
ID Q9LZ00
description Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana GN=MED4 PE=1 SV=1
trembl
ID A0A067K378
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22460 PE=4 SV=1
Gene Ontology
ID GO:0016592
description mediator of rna polymerase ii transcription subunit 4-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02353: 56338-57474
cDNA
(Sanger)
(ID:Location)		 042_D15.ab1: 56504-57165

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010775_040 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 4 [Jatropha curcas]
2 Hb_023771_010 0.0640977201 - - basic helix-loop-helix-containing protein, putative [Ricinus communis]
3 Hb_004781_010 0.0749935304 - - PREDICTED: potassium transporter 11-like [Populus euphratica]
4 Hb_000917_230 0.0806623782 - - PREDICTED: coiled-coil domain-containing protein 130-like [Jatropha curcas]
5 Hb_002811_100 0.0851450328 - - PREDICTED: uncharacterized protein LOC105647658 [Jatropha curcas]
6 Hb_000347_450 0.086525147 - - PREDICTED: tRNA(His) guanylyltransferase 1-like isoform X2 [Jatropha curcas]
7 Hb_000684_040 0.0884914112 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
8 Hb_029243_030 0.0905977492 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
9 Hb_017387_010 0.0917399905 - - PREDICTED: probable serine/threonine-protein kinase At4g35230 [Jatropha curcas]
10 Hb_002357_060 0.0944070836 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
11 Hb_007416_120 0.0972903088 - - arginine/serine-rich splicing factor, putative [Ricinus communis]
12 Hb_023001_040 0.0973876807 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
13 Hb_119530_010 0.098315317 - - -
14 Hb_000012_310 0.0995096168 - - PREDICTED: serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like isoform X2 [Jatropha curcas]
15 Hb_001671_100 0.0996755595 - - glycine-rich RNA-binding family protein [Populus trichocarpa]
16 Hb_003776_060 0.0997961886 - - PREDICTED: uncharacterized protein LOC105641220 [Jatropha curcas]
17 Hb_000574_450 0.1001492842 - - PREDICTED: signal recognition particle 54 kDa protein 2 [Jatropha curcas]
18 Hb_002660_170 0.1008090562 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
19 Hb_007218_120 0.1012580038 - - PREDICTED: pentatricopeptide repeat-containing protein At1g51965, mitochondrial [Jatropha curcas]
20 Hb_016347_010 0.1012706112 - - protein transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_010775_040 Hb_010775_040 Hb_023771_010 Hb_023771_010 Hb_010775_040--Hb_023771_010 Hb_004781_010 Hb_004781_010 Hb_010775_040--Hb_004781_010 Hb_000917_230 Hb_000917_230 Hb_010775_040--Hb_000917_230 Hb_002811_100 Hb_002811_100 Hb_010775_040--Hb_002811_100 Hb_000347_450 Hb_000347_450 Hb_010775_040--Hb_000347_450 Hb_000684_040 Hb_000684_040 Hb_010775_040--Hb_000684_040 Hb_000049_210 Hb_000049_210 Hb_023771_010--Hb_000049_210 Hb_000173_470 Hb_000173_470 Hb_023771_010--Hb_000173_470 Hb_019863_070 Hb_019863_070 Hb_023771_010--Hb_019863_070 Hb_011218_090 Hb_011218_090 Hb_023771_010--Hb_011218_090 Hb_002456_010 Hb_002456_010 Hb_023771_010--Hb_002456_010 Hb_029243_030 Hb_029243_030 Hb_004781_010--Hb_029243_030 Hb_000078_120 Hb_000078_120 Hb_004781_010--Hb_000078_120 Hb_004781_010--Hb_000917_230 Hb_006452_100 Hb_006452_100 Hb_004781_010--Hb_006452_100 Hb_023001_040 Hb_023001_040 Hb_004781_010--Hb_023001_040 Hb_112198_010 Hb_112198_010 Hb_000917_230--Hb_112198_010 Hb_000917_230--Hb_000078_120 Hb_000856_010 Hb_000856_010 Hb_000917_230--Hb_000856_010 Hb_003465_030 Hb_003465_030 Hb_000917_230--Hb_003465_030 Hb_000521_240 Hb_000521_240 Hb_000917_230--Hb_000521_240 Hb_005054_110 Hb_005054_110 Hb_000917_230--Hb_005054_110 Hb_004880_150 Hb_004880_150 Hb_002811_100--Hb_004880_150 Hb_003776_060 Hb_003776_060 Hb_002811_100--Hb_003776_060 Hb_002811_100--Hb_023001_040 Hb_000363_190 Hb_000363_190 Hb_002811_100--Hb_000363_190 Hb_002357_060 Hb_002357_060 Hb_002811_100--Hb_002357_060 Hb_011224_160 Hb_011224_160 Hb_000347_450--Hb_011224_160 Hb_000088_270 Hb_000088_270 Hb_000347_450--Hb_000088_270 Hb_000347_450--Hb_000684_040 Hb_050847_050 Hb_050847_050 Hb_000347_450--Hb_050847_050 Hb_000183_090 Hb_000183_090 Hb_000347_450--Hb_000183_090 Hb_000490_060 Hb_000490_060 Hb_000684_040--Hb_000490_060 Hb_002471_090 Hb_002471_090 Hb_000684_040--Hb_002471_090 Hb_000723_230 Hb_000723_230 Hb_000684_040--Hb_000723_230 Hb_002477_290 Hb_002477_290 Hb_000684_040--Hb_002477_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.94138 12.3196 5.53906 12.7653 4.48773 6.37956
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.81401 14.3556 9.44943 15.8955 11.1476

CAGE analysis