Hb_000490_060

Information

Type -
Description -
Location Contig490: 66510-74603
Sequence    

Annotation

kegg
ID vvi:100241815
description extensin
nr
ID XP_012065486.1
description PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
swissprot
ID Q0JBH9
description Elicitor-responsive protein 3 OS=Oryza sativa subsp. japonica GN=ERG3 PE=2 SV=1
trembl
ID A0A067LFF1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22123 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45285: 66461-74484
cDNA
(Sanger)
(ID:Location)		 031_F16.ab1: 66807-74403 , 053_B03.ab1: 66897-74403

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000490_060 0.0 - - PREDICTED: splicing factor 3A subunit 2 [Jatropha curcas]
2 Hb_000684_040 0.07385314 - - PREDICTED: E3 ubiquitin-protein ligase MBR1 [Jatropha curcas]
3 Hb_003528_050 0.0826826626 - - protein transporter, putative [Ricinus communis]
4 Hb_020178_040 0.0829824181 - - conserved hypothetical protein [Ricinus communis]
5 Hb_006970_050 0.0856726307 transcription factor TF Family: EIL ETHYLENE-INSENSITIVE3 protein, putative [Ricinus communis]
6 Hb_003228_110 0.087985369 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
7 Hb_050847_050 0.0879994157 - - PREDICTED: uncharacterized protein LOC105649140 isoform X1 [Jatropha curcas]
8 Hb_002272_030 0.0935533023 - - PREDICTED: cation/calcium exchanger 5 [Jatropha curcas]
9 Hb_000086_420 0.0945279202 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
10 Hb_011883_020 0.0945991681 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
11 Hb_000120_820 0.0950582216 - - dihydrodipicolinate synthase, putative [Ricinus communis]
12 Hb_002471_090 0.0954115038 - - PREDICTED: uncharacterized protein LOC105634169 [Jatropha curcas]
13 Hb_000922_250 0.0958081832 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
14 Hb_002631_210 0.0962513492 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
15 Hb_000243_260 0.0964683586 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
16 Hb_000327_140 0.0965384972 - - PREDICTED: probable adenylate kinase 6, chloroplastic [Jatropha curcas]
17 Hb_002042_050 0.0969681997 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
18 Hb_000000_230 0.097352786 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
19 Hb_003688_180 0.097764112 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
20 Hb_006588_060 0.0986283296 - - PREDICTED: DDB1- and CUL4-associated factor 13 [Jatropha curcas]

Gene co-expression network

sample Hb_000490_060 Hb_000490_060 Hb_000684_040 Hb_000684_040 Hb_000490_060--Hb_000684_040 Hb_003528_050 Hb_003528_050 Hb_000490_060--Hb_003528_050 Hb_020178_040 Hb_020178_040 Hb_000490_060--Hb_020178_040 Hb_006970_050 Hb_006970_050 Hb_000490_060--Hb_006970_050 Hb_003228_110 Hb_003228_110 Hb_000490_060--Hb_003228_110 Hb_050847_050 Hb_050847_050 Hb_000490_060--Hb_050847_050 Hb_000347_450 Hb_000347_450 Hb_000684_040--Hb_000347_450 Hb_002471_090 Hb_002471_090 Hb_000684_040--Hb_002471_090 Hb_000723_230 Hb_000723_230 Hb_000684_040--Hb_000723_230 Hb_010775_040 Hb_010775_040 Hb_000684_040--Hb_010775_040 Hb_002477_290 Hb_002477_290 Hb_000684_040--Hb_002477_290 Hb_000979_220 Hb_000979_220 Hb_003528_050--Hb_000979_220 Hb_027506_010 Hb_027506_010 Hb_003528_050--Hb_027506_010 Hb_011883_020 Hb_011883_020 Hb_003528_050--Hb_011883_020 Hb_000510_340 Hb_000510_340 Hb_003528_050--Hb_000510_340 Hb_000173_190 Hb_000173_190 Hb_003528_050--Hb_000173_190 Hb_001300_280 Hb_001300_280 Hb_003528_050--Hb_001300_280 Hb_002272_030 Hb_002272_030 Hb_020178_040--Hb_002272_030 Hb_002042_050 Hb_002042_050 Hb_020178_040--Hb_002042_050 Hb_001723_100 Hb_001723_100 Hb_020178_040--Hb_001723_100 Hb_002071_070 Hb_002071_070 Hb_020178_040--Hb_002071_070 Hb_000243_260 Hb_000243_260 Hb_020178_040--Hb_000243_260 Hb_000347_400 Hb_000347_400 Hb_020178_040--Hb_000347_400 Hb_009288_010 Hb_009288_010 Hb_006970_050--Hb_009288_010 Hb_006970_050--Hb_002272_030 Hb_000656_390 Hb_000656_390 Hb_006970_050--Hb_000656_390 Hb_002686_230 Hb_002686_230 Hb_006970_050--Hb_002686_230 Hb_006100_020 Hb_006100_020 Hb_006970_050--Hb_006100_020 Hb_002053_150 Hb_002053_150 Hb_003228_110--Hb_002053_150 Hb_002007_080 Hb_002007_080 Hb_003228_110--Hb_002007_080 Hb_003228_110--Hb_002071_070 Hb_000778_010 Hb_000778_010 Hb_003228_110--Hb_000778_010 Hb_001998_240 Hb_001998_240 Hb_003228_110--Hb_001998_240 Hb_002456_010 Hb_002456_010 Hb_003228_110--Hb_002456_010 Hb_006588_060 Hb_006588_060 Hb_050847_050--Hb_006588_060 Hb_000000_230 Hb_000000_230 Hb_050847_050--Hb_000000_230 Hb_050847_050--Hb_002471_090 Hb_004781_010 Hb_004781_010 Hb_050847_050--Hb_004781_010 Hb_050847_050--Hb_000510_340 Hb_007257_060 Hb_007257_060 Hb_050847_050--Hb_007257_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.3442 45.3927 30.69 31.1459 15.6477 14.3714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.9048 31.5025 26.1979 40.6722 26.6893

CAGE analysis