Hb_011883_020

Information

Type -
Description -
Location Contig11883: 34785-42826
Sequence    

Annotation

kegg
ID rcu:RCOM_1043210
description aspartyl-tRNA synthetase, putative (EC:6.1.1.12)
nr
ID XP_012076788.1
description PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
swissprot
ID P04802
description Aspartate--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DPS1 PE=1 SV=3
trembl
ID A0A067LAZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17184 PE=3 SV=1
Gene Ontology
ID GO:0005737
description aspartate--trna cytoplasmic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_05577: 34998-42686
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011883_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
2 Hb_005074_020 0.0534425208 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
3 Hb_002631_210 0.0631402371 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
4 Hb_027506_010 0.0712379969 - - PREDICTED: cullin-4 [Jatropha curcas]
5 Hb_004208_050 0.0719960042 desease resistance Gene Name: CDC48_N cell division cycle protein 48 [Hevea brasiliensis]
6 Hb_004096_110 0.0734671952 - - PREDICTED: T-complex protein 1 subunit gamma-like [Jatropha curcas]
7 Hb_001691_200 0.0740457037 - - DNA-directed RNA polymerase II subunit RPB2 [Auxenochlorella protothecoides]
8 Hb_001586_030 0.0743658111 - - aspartyl-tRNA synthetase, putative [Ricinus communis]
9 Hb_003777_290 0.0745273411 - - polypyrimidine tract binding protein, putative [Ricinus communis]
10 Hb_000979_220 0.0747294412 - - PREDICTED: uncharacterized protein LOC105634085 isoform X1 [Jatropha curcas]
11 Hb_000243_260 0.0748027064 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
12 Hb_003528_050 0.0752730051 - - protein transporter, putative [Ricinus communis]
13 Hb_001269_380 0.0767001866 - - PREDICTED: uncharacterized protein LOC105630320 isoform X1 [Jatropha curcas]
14 Hb_021576_010 0.0785595904 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]
15 Hb_002042_050 0.0792602312 - - PREDICTED: uncharacterized protein LOC105647554 isoform X1 [Jatropha curcas]
16 Hb_011819_020 0.079511135 - - PREDICTED: uncharacterized protein LOC105643703 isoform X1 [Jatropha curcas]
17 Hb_002411_110 0.0795727105 - - PREDICTED: DNA-directed RNA polymerase III subunit RPC2 [Jatropha curcas]
18 Hb_003228_110 0.0801247257 - - PREDICTED: uncharacterized protein LOC105637245 [Jatropha curcas]
19 Hb_065500_020 0.0811052648 - - Exocyst complex component sec3A isoform 1 [Theobroma cacao]
20 Hb_000206_160 0.0811532287 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]

Gene co-expression network

sample Hb_011883_020 Hb_011883_020 Hb_005074_020 Hb_005074_020 Hb_011883_020--Hb_005074_020 Hb_002631_210 Hb_002631_210 Hb_011883_020--Hb_002631_210 Hb_027506_010 Hb_027506_010 Hb_011883_020--Hb_027506_010 Hb_004208_050 Hb_004208_050 Hb_011883_020--Hb_004208_050 Hb_004096_110 Hb_004096_110 Hb_011883_020--Hb_004096_110 Hb_001691_200 Hb_001691_200 Hb_011883_020--Hb_001691_200 Hb_000080_110 Hb_000080_110 Hb_005074_020--Hb_000080_110 Hb_027760_060 Hb_027760_060 Hb_005074_020--Hb_027760_060 Hb_009615_160 Hb_009615_160 Hb_005074_020--Hb_009615_160 Hb_002276_040 Hb_002276_040 Hb_005074_020--Hb_002276_040 Hb_011925_020 Hb_011925_020 Hb_005074_020--Hb_011925_020 Hb_002686_140 Hb_002686_140 Hb_002631_210--Hb_002686_140 Hb_002631_210--Hb_001691_200 Hb_023344_160 Hb_023344_160 Hb_002631_210--Hb_023344_160 Hb_002631_210--Hb_005074_020 Hb_005408_030 Hb_005408_030 Hb_002631_210--Hb_005408_030 Hb_060980_010 Hb_060980_010 Hb_027506_010--Hb_060980_010 Hb_016172_030 Hb_016172_030 Hb_027506_010--Hb_016172_030 Hb_000206_160 Hb_000206_160 Hb_027506_010--Hb_000206_160 Hb_003758_010 Hb_003758_010 Hb_027506_010--Hb_003758_010 Hb_000409_050 Hb_000409_050 Hb_027506_010--Hb_000409_050 Hb_065500_020 Hb_065500_020 Hb_027506_010--Hb_065500_020 Hb_000261_480 Hb_000261_480 Hb_004208_050--Hb_000261_480 Hb_004048_120 Hb_004048_120 Hb_004208_050--Hb_004048_120 Hb_000358_050 Hb_000358_050 Hb_004208_050--Hb_000358_050 Hb_011819_020 Hb_011819_020 Hb_004208_050--Hb_011819_020 Hb_002890_130 Hb_002890_130 Hb_004208_050--Hb_002890_130 Hb_002411_110 Hb_002411_110 Hb_004208_050--Hb_002411_110 Hb_021576_010 Hb_021576_010 Hb_004096_110--Hb_021576_010 Hb_003777_290 Hb_003777_290 Hb_004096_110--Hb_003777_290 Hb_000327_250 Hb_000327_250 Hb_004096_110--Hb_000327_250 Hb_000979_220 Hb_000979_220 Hb_004096_110--Hb_000979_220 Hb_001269_600 Hb_001269_600 Hb_004096_110--Hb_001269_600 Hb_001691_200--Hb_004208_050 Hb_002609_080 Hb_002609_080 Hb_001691_200--Hb_002609_080 Hb_005181_050 Hb_005181_050 Hb_001691_200--Hb_005181_050 Hb_000270_170 Hb_000270_170 Hb_001691_200--Hb_000270_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.00446 22.9669 18.9091 20.0111 11.6382 10.78
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.94203 10.8231 17.964 30.0341 21.0494

CAGE analysis