Hb_002276_040

Information

Type -
Description -
Location Contig2276: 58407-61971
Sequence    

Annotation

kegg
ID rcu:RCOM_1466340
description amino acid transporter, putative
nr
ID XP_012080480.1
description PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
swissprot
ID Q99624
description Sodium-coupled neutral amino acid transporter 3 OS=Homo sapiens GN=SLC38A3 PE=1 SV=1
trembl
ID A0A067KHU7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11795 PE=4 SV=1
Gene Ontology
ID GO:0016021
description probable sodium-coupled neutral amino acid transporter 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23728: 58503-61961 , PASA_asmbl_23730: 59133-59372
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002276_040 0.0 - - PREDICTED: sodium-coupled neutral amino acid transporter 3-like [Jatropha curcas]
2 Hb_002686_140 0.0686384029 - - PREDICTED: general negative regulator of transcription subunit 3 isoform X1 [Jatropha curcas]
3 Hb_005074_020 0.0699167945 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
4 Hb_000080_110 0.0777535861 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
5 Hb_009615_160 0.0806940034 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
6 Hb_011883_020 0.082859644 - - PREDICTED: LOW QUALITY PROTEIN: aspartate--tRNA ligase, cytoplasmic-like [Jatropha curcas]
7 Hb_001329_200 0.0842855341 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 1 [Jatropha curcas]
8 Hb_002631_210 0.0856970758 - - PREDICTED: uncharacterized protein LOC105646172 [Jatropha curcas]
9 Hb_000318_150 0.0897559904 - - RNA-binding protein Nova-1, putative [Ricinus communis]
10 Hb_027760_060 0.0910003184 - - PREDICTED: KH domain-containing protein At4g18375-like [Jatropha curcas]
11 Hb_006478_030 0.0931158216 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
12 Hb_000243_260 0.0945638301 - - PREDICTED: UPF0183 protein At3g51130 isoform X2 [Jatropha curcas]
13 Hb_000345_320 0.098049778 transcription factor TF Family: MYB-related PREDICTED: protein ALWAYS EARLY 2-like isoform X1 [Jatropha curcas]
14 Hb_010407_080 0.0988903617 - - PREDICTED: putative E3 ubiquitin-protein ligase XBAT35 isoform X1 [Jatropha curcas]
15 Hb_000173_190 0.1001476373 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000059_240 0.1014140251 - - PREDICTED: protein FRIGIDA [Jatropha curcas]
17 Hb_011925_020 0.1014509802 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
18 Hb_000960_080 0.1020751048 - - PREDICTED: topless-related protein 1-like isoform X2 [Jatropha curcas]
19 Hb_022425_060 0.1036567607 - - PREDICTED: protein phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein isoform X1 [Jatropha curcas]
20 Hb_002889_020 0.1038523661 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002276_040 Hb_002276_040 Hb_002686_140 Hb_002686_140 Hb_002276_040--Hb_002686_140 Hb_005074_020 Hb_005074_020 Hb_002276_040--Hb_005074_020 Hb_000080_110 Hb_000080_110 Hb_002276_040--Hb_000080_110 Hb_009615_160 Hb_009615_160 Hb_002276_040--Hb_009615_160 Hb_011883_020 Hb_011883_020 Hb_002276_040--Hb_011883_020 Hb_001329_200 Hb_001329_200 Hb_002276_040--Hb_001329_200 Hb_002631_210 Hb_002631_210 Hb_002686_140--Hb_002631_210 Hb_002686_140--Hb_000080_110 Hb_000347_300 Hb_000347_300 Hb_002686_140--Hb_000347_300 Hb_002686_140--Hb_009615_160 Hb_022425_060 Hb_022425_060 Hb_002686_140--Hb_022425_060 Hb_005074_020--Hb_011883_020 Hb_005074_020--Hb_000080_110 Hb_027760_060 Hb_027760_060 Hb_005074_020--Hb_027760_060 Hb_005074_020--Hb_009615_160 Hb_011925_020 Hb_011925_020 Hb_005074_020--Hb_011925_020 Hb_000321_090 Hb_000321_090 Hb_000080_110--Hb_000321_090 Hb_033799_010 Hb_033799_010 Hb_000080_110--Hb_033799_010 Hb_000049_250 Hb_000049_250 Hb_000080_110--Hb_000049_250 Hb_000080_110--Hb_011925_020 Hb_006478_030 Hb_006478_030 Hb_000080_110--Hb_006478_030 Hb_009615_160--Hb_001329_200 Hb_016172_030 Hb_016172_030 Hb_009615_160--Hb_016172_030 Hb_021165_010 Hb_021165_010 Hb_009615_160--Hb_021165_010 Hb_060980_010 Hb_060980_010 Hb_009615_160--Hb_060980_010 Hb_024650_080 Hb_024650_080 Hb_009615_160--Hb_024650_080 Hb_011883_020--Hb_002631_210 Hb_027506_010 Hb_027506_010 Hb_011883_020--Hb_027506_010 Hb_004208_050 Hb_004208_050 Hb_011883_020--Hb_004208_050 Hb_004096_110 Hb_004096_110 Hb_011883_020--Hb_004096_110 Hb_001691_200 Hb_001691_200 Hb_011883_020--Hb_001691_200 Hb_007839_020 Hb_007839_020 Hb_001329_200--Hb_007839_020 Hb_001329_200--Hb_022425_060 Hb_000802_090 Hb_000802_090 Hb_001329_200--Hb_000802_090 Hb_011360_050 Hb_011360_050 Hb_001329_200--Hb_011360_050 Hb_001328_080 Hb_001328_080 Hb_001329_200--Hb_001328_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.62092 26.2782 19.3997 18.8212 8.77958 6.28971
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.68547 6.15983 12.942 25.8892 15.8835

CAGE analysis