Hb_000321_090

Information

Type -
Description -
Location Contig321: 140542-146705
Sequence    

Annotation

kegg
ID tcc:TCM_041938
description Endoplasmic reticulum [ER]-type calcium ATPase isoform 1
nr
ID XP_012064944.1
description PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
swissprot
ID Q9XES1
description Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=2
trembl
ID A0A067LAC2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_05630 PE=3 SV=1
Gene Ontology
ID GO:0005634
description calcium-transporting atpase endoplasmic reticulum-type-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_33943: 140514-146660
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000321_090 0.0 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
2 Hb_000080_110 0.0553828746 - - PREDICTED: GPI ethanolamine phosphate transferase 3 isoform X1 [Jatropha curcas]
3 Hb_080147_050 0.0658122308 - - PREDICTED: probable plastidic glucose transporter 2 [Jatropha curcas]
4 Hb_002027_190 0.0660919046 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
5 Hb_020805_180 0.0666043953 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
6 Hb_000049_250 0.0677678923 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
7 Hb_001322_180 0.0731377498 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
8 Hb_011925_020 0.0753042283 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA3 [Jatropha curcas]
9 Hb_006478_030 0.0807434289 - - hypothetical protein POPTR_0005s23510g [Populus trichocarpa]
10 Hb_000834_230 0.0820197358 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
11 Hb_033799_010 0.0835747439 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
12 Hb_005074_020 0.0840719025 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
13 Hb_002851_010 0.0910128841 - - sugar transporter, putative [Ricinus communis]
14 Hb_000649_060 0.0912694952 - - PREDICTED: E3 ubiquitin protein ligase RIE1 [Jatropha curcas]
15 Hb_000157_070 0.0916075813 - - PREDICTED: alpha-N-acetylglucosaminidase [Jatropha curcas]
16 Hb_007747_170 0.0917213535 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
17 Hb_007245_020 0.0921313512 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
18 Hb_006829_100 0.0938611258 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000220_120 0.0943381184 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X2 [Jatropha curcas]
20 Hb_000125_180 0.0945497607 - - PREDICTED: flowering time control protein FPA isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000321_090 Hb_000321_090 Hb_000080_110 Hb_000080_110 Hb_000321_090--Hb_000080_110 Hb_080147_050 Hb_080147_050 Hb_000321_090--Hb_080147_050 Hb_002027_190 Hb_002027_190 Hb_000321_090--Hb_002027_190 Hb_020805_180 Hb_020805_180 Hb_000321_090--Hb_020805_180 Hb_000049_250 Hb_000049_250 Hb_000321_090--Hb_000049_250 Hb_001322_180 Hb_001322_180 Hb_000321_090--Hb_001322_180 Hb_005074_020 Hb_005074_020 Hb_000080_110--Hb_005074_020 Hb_033799_010 Hb_033799_010 Hb_000080_110--Hb_033799_010 Hb_000080_110--Hb_000049_250 Hb_011925_020 Hb_011925_020 Hb_000080_110--Hb_011925_020 Hb_006478_030 Hb_006478_030 Hb_000080_110--Hb_006478_030 Hb_080147_050--Hb_020805_180 Hb_000834_230 Hb_000834_230 Hb_080147_050--Hb_000834_230 Hb_000787_200 Hb_000787_200 Hb_080147_050--Hb_000787_200 Hb_158845_060 Hb_158845_060 Hb_080147_050--Hb_158845_060 Hb_007245_020 Hb_007245_020 Hb_080147_050--Hb_007245_020 Hb_002851_010 Hb_002851_010 Hb_002027_190--Hb_002851_010 Hb_002027_190--Hb_000080_110 Hb_002027_190--Hb_020805_180 Hb_002027_190--Hb_033799_010 Hb_007747_170 Hb_007747_170 Hb_002027_190--Hb_007747_170 Hb_020805_180--Hb_002851_010 Hb_000649_060 Hb_000649_060 Hb_020805_180--Hb_000649_060 Hb_000157_070 Hb_000157_070 Hb_020805_180--Hb_000157_070 Hb_000049_250--Hb_011925_020 Hb_000049_250--Hb_033799_010 Hb_000049_250--Hb_005074_020 Hb_000220_120 Hb_000220_120 Hb_000049_250--Hb_000220_120 Hb_001322_180--Hb_000049_250 Hb_006829_100 Hb_006829_100 Hb_001322_180--Hb_006829_100 Hb_001322_180--Hb_000834_230 Hb_000035_010 Hb_000035_010 Hb_001322_180--Hb_000035_010 Hb_001322_180--Hb_002027_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.12988 21.2813 13.1775 17.7306 8.92047 8.20379
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.63997 4.18119 7.8385 31.4456 19.2308

CAGE analysis