Hb_006829_100

Information

Type -
Description -
Location Contig6829: 90833-93215
Sequence    

Annotation

kegg
ID rcu:RCOM_1441040
description hypothetical protein
nr
ID XP_002531838.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LX73
description E3 UFM1-protein ligase 1 homolog OS=Arabidopsis thaliana GN=At3g46220 PE=1 SV=1
trembl
ID B9T0R9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1441040 PE=4 SV=1
Gene Ontology
ID GO:0016874
description e3 ufm1-protein ligase 1 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_53897: 90836-92537 , PASA_asmbl_53898: 92657-92956 , PASA_asmbl_53899: 92966-93209
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006829_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_007747_170 0.0848473672 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
3 Hb_001322_180 0.0849168281 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 26 [Jatropha curcas]
4 Hb_007426_140 0.0863955709 - - ornithine aminotransferase, putative [Ricinus communis]
5 Hb_019840_030 0.0868222521 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
6 Hb_000009_120 0.0883018728 - - PREDICTED: probable Xaa-Pro aminopeptidase P isoform X1 [Jatropha curcas]
7 Hb_000834_230 0.0886686372 - - PREDICTED: ras-related protein RHN1-like [Jatropha curcas]
8 Hb_000035_010 0.0914696233 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
9 Hb_000049_250 0.0916719456 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
10 Hb_002596_060 0.0917683282 - - conserved hypothetical protein [Ricinus communis]
11 Hb_005333_050 0.0919922487 - - PREDICTED: glucose-6-phosphate isomerase 1, chloroplastic [Jatropha curcas]
12 Hb_075315_010 0.0927669671 - - ornithine aminotransferase [Camellia sinensis]
13 Hb_000321_090 0.0938611258 - - PREDICTED: calcium-transporting ATPase 1, endoplasmic reticulum-type-like [Jatropha curcas]
14 Hb_004411_030 0.0938761554 - - hypothetical protein POPTR_0017s00310g [Populus trichocarpa]
15 Hb_000122_080 0.0943364813 - - PREDICTED: staphylococcal-like nuclease CAN2 [Jatropha curcas]
16 Hb_000395_220 0.0961099312 - - PREDICTED: LOW QUALITY PROTEIN: ultraviolet-B receptor UVR8 [Jatropha curcas]
17 Hb_002027_190 0.0971740399 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
18 Hb_003849_240 0.0974847672 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
19 Hb_000608_230 0.0977324669 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
20 Hb_135959_010 0.098281648 - - hypothetical protein JCGZ_07060 [Jatropha curcas]

Gene co-expression network

sample Hb_006829_100 Hb_006829_100 Hb_007747_170 Hb_007747_170 Hb_006829_100--Hb_007747_170 Hb_001322_180 Hb_001322_180 Hb_006829_100--Hb_001322_180 Hb_007426_140 Hb_007426_140 Hb_006829_100--Hb_007426_140 Hb_019840_030 Hb_019840_030 Hb_006829_100--Hb_019840_030 Hb_000009_120 Hb_000009_120 Hb_006829_100--Hb_000009_120 Hb_000834_230 Hb_000834_230 Hb_006829_100--Hb_000834_230 Hb_007747_170--Hb_019840_030 Hb_004450_070 Hb_004450_070 Hb_007747_170--Hb_004450_070 Hb_000608_230 Hb_000608_230 Hb_007747_170--Hb_000608_230 Hb_007245_020 Hb_007245_020 Hb_007747_170--Hb_007245_020 Hb_000331_580 Hb_000331_580 Hb_007747_170--Hb_000331_580 Hb_002027_190 Hb_002027_190 Hb_007747_170--Hb_002027_190 Hb_000321_090 Hb_000321_090 Hb_001322_180--Hb_000321_090 Hb_000049_250 Hb_000049_250 Hb_001322_180--Hb_000049_250 Hb_001322_180--Hb_000834_230 Hb_000035_010 Hb_000035_010 Hb_001322_180--Hb_000035_010 Hb_001322_180--Hb_002027_190 Hb_000395_220 Hb_000395_220 Hb_007426_140--Hb_000395_220 Hb_083799_010 Hb_083799_010 Hb_007426_140--Hb_083799_010 Hb_002836_100 Hb_002836_100 Hb_007426_140--Hb_002836_100 Hb_075315_010 Hb_075315_010 Hb_007426_140--Hb_075315_010 Hb_003849_240 Hb_003849_240 Hb_007426_140--Hb_003849_240 Hb_060980_010 Hb_060980_010 Hb_019840_030--Hb_060980_010 Hb_002596_060 Hb_002596_060 Hb_019840_030--Hb_002596_060 Hb_001221_180 Hb_001221_180 Hb_019840_030--Hb_001221_180 Hb_001085_290 Hb_001085_290 Hb_019840_030--Hb_001085_290 Hb_027506_010 Hb_027506_010 Hb_019840_030--Hb_027506_010 Hb_000009_120--Hb_003849_240 Hb_001414_040 Hb_001414_040 Hb_000009_120--Hb_001414_040 Hb_002889_020 Hb_002889_020 Hb_000009_120--Hb_002889_020 Hb_005333_050 Hb_005333_050 Hb_000009_120--Hb_005333_050 Hb_000080_110 Hb_000080_110 Hb_000009_120--Hb_000080_110 Hb_000787_200 Hb_000787_200 Hb_000834_230--Hb_000787_200 Hb_080147_050 Hb_080147_050 Hb_000834_230--Hb_080147_050 Hb_000834_230--Hb_000321_090 Hb_000834_230--Hb_000049_250 Hb_000220_120 Hb_000220_120 Hb_000834_230--Hb_000220_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.01568 11.6549 8.28559 9.02782 6.60183 8.19341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.58775 2.4506 4.25269 19.2513 7.70231

CAGE analysis