Hb_007747_170

Information

Type -
Description -
Location Contig7747: 146124-149808
Sequence    

Annotation

kegg
ID rcu:RCOM_1258630
description hypothetical protein
nr
ID XP_012074388.1
description PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
swissprot
ID Q66GQ2
description Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=2 SV=2
trembl
ID A0A067KWH3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08823 PE=4 SV=1
Gene Ontology
ID GO:0005886
description PREDICTED: uncharacterized protein At5g41620

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57751: 146178-146616 , PASA_asmbl_57752: 147241-147458 , PASA_asmbl_57753: 147919-148928
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007747_170 0.0 - - PREDICTED: uncharacterized protein At5g41620 [Jatropha curcas]
2 Hb_019840_030 0.0621084337 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
3 Hb_004450_070 0.0798636218 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
4 Hb_000608_230 0.0805583265 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Jatropha curcas]
5 Hb_007245_020 0.0823694782 - - PREDICTED: pre-mRNA-processing factor 17-like isoform X1 [Populus euphratica]
6 Hb_000331_580 0.0842287726 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
7 Hb_002027_190 0.0842743192 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
8 Hb_006829_100 0.0848473672 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000243_300 0.0858508112 - - catalytic, putative [Ricinus communis]
10 Hb_006907_140 0.0862934428 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000001_170 0.0863785273 - - amino acid transporter, putative [Ricinus communis]
12 Hb_141069_010 0.0867014292 - - conserved hypothetical protein [Ricinus communis]
13 Hb_060980_010 0.0868044552 - - PREDICTED: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1-like isoform X1 [Populus euphratica]
14 Hb_075315_010 0.0882397307 - - ornithine aminotransferase [Camellia sinensis]
15 Hb_009615_160 0.0882890156 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
16 Hb_012286_040 0.0890309773 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
17 Hb_001552_030 0.0891576723 - - PREDICTED: galactoside 2-alpha-L-fucosyltransferase-like isoform X1 [Jatropha curcas]
18 Hb_002596_060 0.0900578999 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002889_020 0.090145604 - - PREDICTED: mitogen-activated protein kinase kinase 3 [Jatropha curcas]
20 Hb_000152_700 0.0904428858 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]

Gene co-expression network

sample Hb_007747_170 Hb_007747_170 Hb_019840_030 Hb_019840_030 Hb_007747_170--Hb_019840_030 Hb_004450_070 Hb_004450_070 Hb_007747_170--Hb_004450_070 Hb_000608_230 Hb_000608_230 Hb_007747_170--Hb_000608_230 Hb_007245_020 Hb_007245_020 Hb_007747_170--Hb_007245_020 Hb_000331_580 Hb_000331_580 Hb_007747_170--Hb_000331_580 Hb_002027_190 Hb_002027_190 Hb_007747_170--Hb_002027_190 Hb_060980_010 Hb_060980_010 Hb_019840_030--Hb_060980_010 Hb_002596_060 Hb_002596_060 Hb_019840_030--Hb_002596_060 Hb_001221_180 Hb_001221_180 Hb_019840_030--Hb_001221_180 Hb_001085_290 Hb_001085_290 Hb_019840_030--Hb_001085_290 Hb_027506_010 Hb_027506_010 Hb_019840_030--Hb_027506_010 Hb_000890_070 Hb_000890_070 Hb_004450_070--Hb_000890_070 Hb_019280_010 Hb_019280_010 Hb_004450_070--Hb_019280_010 Hb_000152_700 Hb_000152_700 Hb_004450_070--Hb_000152_700 Hb_001642_070 Hb_001642_070 Hb_004450_070--Hb_001642_070 Hb_004677_050 Hb_004677_050 Hb_004450_070--Hb_004677_050 Hb_000237_050 Hb_000237_050 Hb_004450_070--Hb_000237_050 Hb_005402_040 Hb_005402_040 Hb_000608_230--Hb_005402_040 Hb_140049_080 Hb_140049_080 Hb_000608_230--Hb_140049_080 Hb_178968_050 Hb_178968_050 Hb_000608_230--Hb_178968_050 Hb_000608_230--Hb_000331_580 Hb_003216_090 Hb_003216_090 Hb_000608_230--Hb_003216_090 Hb_000823_030 Hb_000823_030 Hb_000608_230--Hb_000823_030 Hb_002357_070 Hb_002357_070 Hb_007245_020--Hb_002357_070 Hb_123531_010 Hb_123531_010 Hb_007245_020--Hb_123531_010 Hb_006478_030 Hb_006478_030 Hb_007245_020--Hb_006478_030 Hb_000172_340 Hb_000172_340 Hb_007245_020--Hb_000172_340 Hb_007245_020--Hb_060980_010 Hb_000103_290 Hb_000103_290 Hb_007245_020--Hb_000103_290 Hb_000008_240 Hb_000008_240 Hb_000331_580--Hb_000008_240 Hb_000003_100 Hb_000003_100 Hb_000331_580--Hb_000003_100 Hb_005568_040 Hb_005568_040 Hb_000331_580--Hb_005568_040 Hb_002007_110 Hb_002007_110 Hb_000331_580--Hb_002007_110 Hb_000331_580--Hb_123531_010 Hb_006531_020 Hb_006531_020 Hb_000331_580--Hb_006531_020 Hb_000321_090 Hb_000321_090 Hb_002027_190--Hb_000321_090 Hb_002851_010 Hb_002851_010 Hb_002027_190--Hb_002851_010 Hb_000080_110 Hb_000080_110 Hb_002027_190--Hb_000080_110 Hb_020805_180 Hb_020805_180 Hb_002027_190--Hb_020805_180 Hb_033799_010 Hb_033799_010 Hb_002027_190--Hb_033799_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.04167 7.99421 4.96239 8.80186 5.27774 4.46246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.9943 1.59883 3.34151 10.6937 6.49769

CAGE analysis