Hb_019280_010

Information

Type -
Description -
Location Contig19280: 1411-6499
Sequence    

Annotation

kegg
ID rcu:RCOM_1190410
description hypothetical protein
nr
ID XP_012081964.1
description PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
swissprot
ID Q8RWD6
description F-box protein At5g39450 OS=Arabidopsis thaliana GN=At5g39450 PE=2 SV=1
trembl
ID A0A067KB26
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19299 PE=4 SV=1
Gene Ontology
ID GO:0005515
description f-box protein at5g39450 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19199: 1434-6693
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019280_010 0.0 - - PREDICTED: F-box protein At5g39450 isoform X2 [Jatropha curcas]
2 Hb_004450_070 0.0590717533 - - PREDICTED: 2-hydroxyacyl-CoA lyase [Jatropha curcas]
3 Hb_103684_010 0.0715206759 - - PREDICTED: cullin-1 isoform X3 [Nicotiana tomentosiformis]
4 Hb_001500_100 0.0729405839 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000237_050 0.0731414261 - - CP2 [Hevea brasiliensis]
6 Hb_004677_050 0.0732308971 - - PREDICTED: importin beta-like SAD2 isoform X2 [Jatropha curcas]
7 Hb_000085_450 0.076158633 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
8 Hb_005074_020 0.0774453319 - - PREDICTED: uncharacterized protein LOC105644455 isoform X1 [Jatropha curcas]
9 Hb_000890_070 0.0792270194 - - PREDICTED: protein ALWAYS EARLY 3 isoform X2 [Jatropha curcas]
10 Hb_000579_130 0.0798965966 - - ubiquitin-protein ligase, putative [Ricinus communis]
11 Hb_006006_040 0.0804778246 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
12 Hb_001097_040 0.0808718281 - - PREDICTED: probable dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 3B [Jatropha curcas]
13 Hb_016172_030 0.0837565306 - - PREDICTED: probable UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase SEC [Jatropha curcas]
14 Hb_001511_180 0.0839461211 - - Clathrin heavy chain 2 -like protein [Gossypium arboreum]
15 Hb_006452_120 0.0839795573 - - PREDICTED: protein FAM188A [Jatropha curcas]
16 Hb_012286_040 0.0841841098 - - PREDICTED: pre-mRNA-splicing factor RSE1 [Jatropha curcas]
17 Hb_001167_050 0.0848365584 - - PREDICTED: uncharacterized protein LOC105648014 [Jatropha curcas]
18 Hb_001642_070 0.0848614693 - - PREDICTED: uncharacterized protein LOC105646431 [Jatropha curcas]
19 Hb_002749_060 0.0862102566 - - PREDICTED: protein transport protein Sec61 subunit alpha-like [Jatropha curcas]
20 Hb_001811_170 0.0862547842 - - dynamin, putative [Ricinus communis]

Gene co-expression network

sample Hb_019280_010 Hb_019280_010 Hb_004450_070 Hb_004450_070 Hb_019280_010--Hb_004450_070 Hb_103684_010 Hb_103684_010 Hb_019280_010--Hb_103684_010 Hb_001500_100 Hb_001500_100 Hb_019280_010--Hb_001500_100 Hb_000237_050 Hb_000237_050 Hb_019280_010--Hb_000237_050 Hb_004677_050 Hb_004677_050 Hb_019280_010--Hb_004677_050 Hb_000085_450 Hb_000085_450 Hb_019280_010--Hb_000085_450 Hb_000890_070 Hb_000890_070 Hb_004450_070--Hb_000890_070 Hb_000152_700 Hb_000152_700 Hb_004450_070--Hb_000152_700 Hb_001642_070 Hb_001642_070 Hb_004450_070--Hb_001642_070 Hb_004450_070--Hb_004677_050 Hb_004450_070--Hb_000237_050 Hb_103684_010--Hb_000237_050 Hb_003544_050 Hb_003544_050 Hb_103684_010--Hb_003544_050 Hb_003097_140 Hb_003097_140 Hb_103684_010--Hb_003097_140 Hb_012114_100 Hb_012114_100 Hb_103684_010--Hb_012114_100 Hb_001369_360 Hb_001369_360 Hb_103684_010--Hb_001369_360 Hb_003020_100 Hb_003020_100 Hb_001500_100--Hb_003020_100 Hb_000322_080 Hb_000322_080 Hb_001500_100--Hb_000322_080 Hb_001500_100--Hb_003544_050 Hb_001434_080 Hb_001434_080 Hb_001500_100--Hb_001434_080 Hb_006452_120 Hb_006452_120 Hb_001500_100--Hb_006452_120 Hb_000237_050--Hb_003097_140 Hb_027445_020 Hb_027445_020 Hb_000237_050--Hb_027445_020 Hb_001437_190 Hb_001437_190 Hb_000237_050--Hb_001437_190 Hb_002213_020 Hb_002213_020 Hb_004677_050--Hb_002213_020 Hb_000984_170 Hb_000984_170 Hb_004677_050--Hb_000984_170 Hb_005663_110 Hb_005663_110 Hb_004677_050--Hb_005663_110 Hb_016347_010 Hb_016347_010 Hb_004677_050--Hb_016347_010 Hb_004208_050 Hb_004208_050 Hb_004677_050--Hb_004208_050 Hb_002749_060 Hb_002749_060 Hb_004677_050--Hb_002749_060 Hb_015026_130 Hb_015026_130 Hb_000085_450--Hb_015026_130 Hb_000089_180 Hb_000089_180 Hb_000085_450--Hb_000089_180 Hb_000085_450--Hb_003020_100 Hb_086063_020 Hb_086063_020 Hb_000085_450--Hb_086063_020 Hb_007137_050 Hb_007137_050 Hb_000085_450--Hb_007137_050 Hb_004037_020 Hb_004037_020 Hb_000085_450--Hb_004037_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.63415 15.4861 8.51823 19.6483 5.37758 8.58392
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.00576 6.43567 8.09716 17.5114 12.96

CAGE analysis