Hb_015026_130

Information

Type -
Description -
Location Contig15026: 75420-77858
Sequence    

Annotation

kegg
ID rcu:RCOM_1062960
description quinone oxidoreductase, putative (EC:1.6.5.5)
nr
ID XP_002521427.1
description quinone oxidoreductase, putative [Ricinus communis]
swissprot
ID Q53FA7
description Quinone oxidoreductase PIG3 OS=Homo sapiens GN=TP53I3 PE=1 SV=2
trembl
ID B9S608
description Quinone oxidoreductase, putative OS=Ricinus communis GN=RCOM_1062960 PE=4 SV=1
Gene Ontology
ID GO:0008270
description quinone oxidoreductase pig3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12604: 75481-77861 , PASA_asmbl_12605: 78509-78879
cDNA
(Sanger)
(ID:Location)		 030_E02.ab1: 76310-77837

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_015026_130 0.0 - - quinone oxidoreductase, putative [Ricinus communis]
2 Hb_000089_180 0.0577157069 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
3 Hb_000085_450 0.0581300255 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 20 [Jatropha curcas]
4 Hb_001114_110 0.0609280973 - - PREDICTED: probable ubiquitin-like-specific protease 2A isoform X1 [Jatropha curcas]
5 Hb_004128_130 0.0706632901 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
6 Hb_001141_310 0.0738608267 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
7 Hb_001258_110 0.074975317 - - transporter, putative [Ricinus communis]
8 Hb_031527_030 0.0768849857 - - PREDICTED: ribosomal RNA processing protein 1 homolog [Jatropha curcas]
9 Hb_086063_020 0.0795657799 transcription factor TF Family: SNF2 PREDICTED: SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [Jatropha curcas]
10 Hb_003020_100 0.0795792419 - - PREDICTED: transcription initiation factor IIA large subunit [Jatropha curcas]
11 Hb_006006_040 0.0807952872 - - S-methyl-5-thioribose kinase isoform 2 [Theobroma cacao]
12 Hb_000243_300 0.0832674152 - - catalytic, putative [Ricinus communis]
13 Hb_000046_570 0.0835900964 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
14 Hb_006502_030 0.0841653869 - - PREDICTED: probable kinetochore protein ndc80 [Jatropha curcas]
15 Hb_004037_020 0.0849695239 - - PREDICTED: uncharacterized protein LOC105632366 isoform X1 [Jatropha curcas]
16 Hb_001434_080 0.085393375 - - PREDICTED: probable protein S-acyltransferase 7 [Jatropha curcas]
17 Hb_122548_010 0.085887002 - - acyl-CoA oxidase, putative [Ricinus communis]
18 Hb_000962_030 0.0861880761 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
19 Hb_001405_210 0.0864822348 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
20 Hb_002983_080 0.0866371119 - - acetylornithine aminotransferase, partial [Prunus persica]

Gene co-expression network

sample Hb_015026_130 Hb_015026_130 Hb_000089_180 Hb_000089_180 Hb_015026_130--Hb_000089_180 Hb_000085_450 Hb_000085_450 Hb_015026_130--Hb_000085_450 Hb_001114_110 Hb_001114_110 Hb_015026_130--Hb_001114_110 Hb_004128_130 Hb_004128_130 Hb_015026_130--Hb_004128_130 Hb_001141_310 Hb_001141_310 Hb_015026_130--Hb_001141_310 Hb_001258_110 Hb_001258_110 Hb_015026_130--Hb_001258_110 Hb_000089_180--Hb_004128_130 Hb_000089_180--Hb_000085_450 Hb_004143_100 Hb_004143_100 Hb_000089_180--Hb_004143_100 Hb_001408_110 Hb_001408_110 Hb_000089_180--Hb_001408_110 Hb_004037_020 Hb_004037_020 Hb_000089_180--Hb_004037_020 Hb_003020_100 Hb_003020_100 Hb_000085_450--Hb_003020_100 Hb_086063_020 Hb_086063_020 Hb_000085_450--Hb_086063_020 Hb_007137_050 Hb_007137_050 Hb_000085_450--Hb_007137_050 Hb_000085_450--Hb_004037_020 Hb_021165_010 Hb_021165_010 Hb_001114_110--Hb_021165_010 Hb_000962_030 Hb_000962_030 Hb_001114_110--Hb_000962_030 Hb_031527_030 Hb_031527_030 Hb_001114_110--Hb_031527_030 Hb_016172_030 Hb_016172_030 Hb_001114_110--Hb_016172_030 Hb_001434_080 Hb_001434_080 Hb_001114_110--Hb_001434_080 Hb_004128_130--Hb_004143_100 Hb_000046_570 Hb_000046_570 Hb_004128_130--Hb_000046_570 Hb_004109_230 Hb_004109_230 Hb_004128_130--Hb_004109_230 Hb_000521_330 Hb_000521_330 Hb_004128_130--Hb_000521_330 Hb_000258_110 Hb_000258_110 Hb_001141_310--Hb_000258_110 Hb_121089_030 Hb_121089_030 Hb_001141_310--Hb_121089_030 Hb_001141_310--Hb_086063_020 Hb_188063_050 Hb_188063_050 Hb_001141_310--Hb_188063_050 Hb_001552_030 Hb_001552_030 Hb_001141_310--Hb_001552_030 Hb_001014_210 Hb_001014_210 Hb_001258_110--Hb_001014_210 Hb_002284_250 Hb_002284_250 Hb_001258_110--Hb_002284_250 Hb_005663_110 Hb_005663_110 Hb_001258_110--Hb_005663_110 Hb_000130_180 Hb_000130_180 Hb_001258_110--Hb_000130_180 Hb_001258_110--Hb_001434_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7103 46.8167 32.226 63.3663 25.1913 30.8266
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
22.1596 22.6309 17.6942 47.5978 25.102

CAGE analysis