Hb_000521_330

Information

Type -
Description -
Location Contig521: 248792-252041
Sequence    

Annotation

kegg
ID rcu:RCOM_1771090
description hypothetical protein
nr
ID XP_002512150.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q5RF97
description Box C/D snoRNA protein 1 OS=Pongo abelii GN=ZNHIT6 PE=2 SV=1
trembl
ID B9REI1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1771090 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_46730: 249632-252018
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000521_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002492_010 0.060415723 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
3 Hb_004143_100 0.0623752149 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000189_600 0.0634403672 - - PREDICTED: protein MON2 homolog isoform X1 [Jatropha curcas]
5 Hb_000089_180 0.0647451422 - - PREDICTED: homoserine kinase-like [Jatropha curcas]
6 Hb_000029_060 0.0658335354 - - PREDICTED: mRNA-decapping enzyme-like protein [Jatropha curcas]
7 Hb_003906_200 0.0661626261 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
8 Hb_003849_110 0.0669017764 - - hypothetical protein JCGZ_17842 [Jatropha curcas]
9 Hb_002849_130 0.0683770833 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
10 Hb_001716_020 0.0688670747 - - hydrolase, putative [Ricinus communis]
11 Hb_004994_240 0.0692679806 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
12 Hb_002007_150 0.0692830839 - - -
13 Hb_001377_190 0.0703350416 transcription factor TF Family: PHD PREDICTED: histone-lysine N-methyltransferase ATX3 isoform X2 [Jatropha curcas]
14 Hb_004128_130 0.0740746754 - - PREDICTED: protein MODIFIER OF SNC1 11 isoform X1 [Jatropha curcas]
15 Hb_007472_070 0.0749642656 - - cir, putative [Ricinus communis]
16 Hb_001481_060 0.0755938289 - - PREDICTED: E3 ubiquitin-protein ligase HOS1 isoform X1 [Jatropha curcas]
17 Hb_000086_420 0.0756374839 - - PREDICTED: phospholipid--sterol O-acyltransferase [Jatropha curcas]
18 Hb_000028_130 0.0760376909 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
19 Hb_007248_030 0.0770007611 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
20 Hb_006520_040 0.0774817931 - - PREDICTED: uncharacterized protein LOC105641714 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000521_330 Hb_000521_330 Hb_002492_010 Hb_002492_010 Hb_000521_330--Hb_002492_010 Hb_004143_100 Hb_004143_100 Hb_000521_330--Hb_004143_100 Hb_000189_600 Hb_000189_600 Hb_000521_330--Hb_000189_600 Hb_000089_180 Hb_000089_180 Hb_000521_330--Hb_000089_180 Hb_000029_060 Hb_000029_060 Hb_000521_330--Hb_000029_060 Hb_003906_200 Hb_003906_200 Hb_000521_330--Hb_003906_200 Hb_001716_020 Hb_001716_020 Hb_002492_010--Hb_001716_020 Hb_001481_060 Hb_001481_060 Hb_002492_010--Hb_001481_060 Hb_000087_060 Hb_000087_060 Hb_002492_010--Hb_000087_060 Hb_004994_240 Hb_004994_240 Hb_002492_010--Hb_004994_240 Hb_001089_050 Hb_001089_050 Hb_002492_010--Hb_001089_050 Hb_002492_010--Hb_004143_100 Hb_000402_230 Hb_000402_230 Hb_004143_100--Hb_000402_230 Hb_003866_080 Hb_003866_080 Hb_004143_100--Hb_003866_080 Hb_004128_130 Hb_004128_130 Hb_004143_100--Hb_004128_130 Hb_004143_100--Hb_001089_050 Hb_003120_080 Hb_003120_080 Hb_004143_100--Hb_003120_080 Hb_004333_040 Hb_004333_040 Hb_000189_600--Hb_004333_040 Hb_183433_010 Hb_183433_010 Hb_000189_600--Hb_183433_010 Hb_000617_230 Hb_000617_230 Hb_000189_600--Hb_000617_230 Hb_001377_190 Hb_001377_190 Hb_000189_600--Hb_001377_190 Hb_001430_080 Hb_001430_080 Hb_000189_600--Hb_001430_080 Hb_000089_180--Hb_004128_130 Hb_015026_130 Hb_015026_130 Hb_000089_180--Hb_015026_130 Hb_000085_450 Hb_000085_450 Hb_000089_180--Hb_000085_450 Hb_000089_180--Hb_004143_100 Hb_001408_110 Hb_001408_110 Hb_000089_180--Hb_001408_110 Hb_004037_020 Hb_004037_020 Hb_000089_180--Hb_004037_020 Hb_003849_110 Hb_003849_110 Hb_000029_060--Hb_003849_110 Hb_000029_060--Hb_001716_020 Hb_004916_010 Hb_004916_010 Hb_000029_060--Hb_004916_010 Hb_002110_080 Hb_002110_080 Hb_000029_060--Hb_002110_080 Hb_000086_420 Hb_000086_420 Hb_000029_060--Hb_000086_420 Hb_000327_140 Hb_000327_140 Hb_000029_060--Hb_000327_140 Hb_112198_010 Hb_112198_010 Hb_003906_200--Hb_112198_010 Hb_003906_200--Hb_002492_010 Hb_003906_200--Hb_004143_100 Hb_001473_160 Hb_001473_160 Hb_003906_200--Hb_001473_160 Hb_000072_120 Hb_000072_120 Hb_003906_200--Hb_000072_120 Hb_003544_060 Hb_003544_060 Hb_003906_200--Hb_003544_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.67257 12.0242 8.12574 10.1388 5.8028 6.10457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.65814 8.321 5.89265 9.10891 8.84032

CAGE analysis