Hb_003544_060

Information

Type -
Description -
Location Contig3544: 34131-48318
Sequence    

Annotation

kegg
ID cit:102627622
description serine/threonine-protein phosphatase 5-like
nr
ID KDP26984.1
description hypothetical protein JCGZ_22100 [Jatropha curcas]
swissprot
ID Q84K11
description Serine/threonine-protein phosphatase 5 OS=Solanum lycopersicum GN=PP5 PE=1 SV=1
trembl
ID A0A067K592
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22100 PE=4 SV=1
Gene Ontology
ID GO:0005634
description serine threonine-protein phosphatase 5 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36740: 33997-48215 , PASA_asmbl_36742: 43243-43510
cDNA
(Sanger)
(ID:Location)		 003_D17.ab1: 39022-48215 , 003_G21.ab1: 39007-48215

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003544_060 0.0 - - hypothetical protein JCGZ_22100 [Jatropha curcas]
2 Hb_005918_010 0.058379135 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
3 Hb_002456_010 0.062149231 - - PREDICTED: protein kinase and PP2C-like domain-containing protein isoform X2 [Jatropha curcas]
4 Hb_003906_200 0.0625751742 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
5 Hb_002234_090 0.0634845461 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
6 Hb_000836_460 0.0662627038 - - PREDICTED: uncharacterized protein LOC105628435 [Jatropha curcas]
7 Hb_011618_090 0.0674207962 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
8 Hb_000107_660 0.0675689017 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
9 Hb_004030_080 0.0691848852 - - hypothetical protein JCGZ_25110 [Jatropha curcas]
10 Hb_005634_010 0.0701381151 - - WD-repeat protein, putative [Ricinus communis]
11 Hb_003835_070 0.071589691 - - PREDICTED: uncharacterized protein LOC105641698 isoform X2 [Jatropha curcas]
12 Hb_002217_170 0.071909466 - - PREDICTED: E3 ubiquitin-protein ligase UPL6-like isoform X1 [Gossypium raimondii]
13 Hb_105105_010 0.0727652231 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
14 Hb_005137_040 0.0737617527 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
15 Hb_093458_040 0.0748203573 - - PREDICTED: non-lysosomal glucosylceramidase [Jatropha curcas]
16 Hb_000565_040 0.0755596616 - - RecName: Full=Superoxide dismutase [Mn], mitochondrial; Flags: Precursor [Hevea brasiliensis]
17 Hb_002492_010 0.0757629444 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 2-like [Populus euphratica]
18 Hb_003464_090 0.0761172819 transcription factor TF Family: Trihelix PREDICTED: uncharacterized protein LOC105642342 [Jatropha curcas]
19 Hb_002989_020 0.0762590712 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
20 Hb_004586_220 0.0771164474 - - PREDICTED: WD and tetratricopeptide repeats protein 1 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_003544_060 Hb_003544_060 Hb_005918_010 Hb_005918_010 Hb_003544_060--Hb_005918_010 Hb_002456_010 Hb_002456_010 Hb_003544_060--Hb_002456_010 Hb_003906_200 Hb_003906_200 Hb_003544_060--Hb_003906_200 Hb_002234_090 Hb_002234_090 Hb_003544_060--Hb_002234_090 Hb_000836_460 Hb_000836_460 Hb_003544_060--Hb_000836_460 Hb_011618_090 Hb_011618_090 Hb_003544_060--Hb_011618_090 Hb_005137_040 Hb_005137_040 Hb_005918_010--Hb_005137_040 Hb_012506_030 Hb_012506_030 Hb_005918_010--Hb_012506_030 Hb_001153_190 Hb_001153_190 Hb_005918_010--Hb_001153_190 Hb_105105_010 Hb_105105_010 Hb_005918_010--Hb_105105_010 Hb_000441_220 Hb_000441_220 Hb_005918_010--Hb_000441_220 Hb_000111_290 Hb_000111_290 Hb_002456_010--Hb_000111_290 Hb_001876_050 Hb_001876_050 Hb_002456_010--Hb_001876_050 Hb_000614_240 Hb_000614_240 Hb_002456_010--Hb_000614_240 Hb_004324_130 Hb_004324_130 Hb_002456_010--Hb_004324_130 Hb_000920_300 Hb_000920_300 Hb_002456_010--Hb_000920_300 Hb_112198_010 Hb_112198_010 Hb_003906_200--Hb_112198_010 Hb_002492_010 Hb_002492_010 Hb_003906_200--Hb_002492_010 Hb_004143_100 Hb_004143_100 Hb_003906_200--Hb_004143_100 Hb_001473_160 Hb_001473_160 Hb_003906_200--Hb_001473_160 Hb_000072_120 Hb_000072_120 Hb_003906_200--Hb_000072_120 Hb_010712_050 Hb_010712_050 Hb_002234_090--Hb_010712_050 Hb_002675_130 Hb_002675_130 Hb_002234_090--Hb_002675_130 Hb_004916_010 Hb_004916_010 Hb_002234_090--Hb_004916_010 Hb_003835_070 Hb_003835_070 Hb_002234_090--Hb_003835_070 Hb_003768_050 Hb_003768_050 Hb_002234_090--Hb_003768_050 Hb_000258_110 Hb_000258_110 Hb_000836_460--Hb_000258_110 Hb_004586_220 Hb_004586_220 Hb_000836_460--Hb_004586_220 Hb_005634_010 Hb_005634_010 Hb_000836_460--Hb_005634_010 Hb_003020_100 Hb_003020_100 Hb_000836_460--Hb_003020_100 Hb_000329_060 Hb_000329_060 Hb_000836_460--Hb_000329_060 Hb_011618_090--Hb_003835_070 Hb_000317_370 Hb_000317_370 Hb_011618_090--Hb_000317_370 Hb_000579_230 Hb_000579_230 Hb_011618_090--Hb_000579_230 Hb_000922_360 Hb_000922_360 Hb_011618_090--Hb_000922_360 Hb_007083_030 Hb_007083_030 Hb_011618_090--Hb_007083_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9862 18.4098 14.5518 16.5892 10.2699 10.8503
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.45 10.2875 14.0711 19.527 12.0089

CAGE analysis