Hb_012506_030

Information

Type -
Description -
Location Contig12506: 41249-57014
Sequence    

Annotation

kegg
ID rcu:RCOM_1186100
description AP-2 complex subunit alpha, putative
nr
ID XP_002527437.1
description AP-2 complex subunit alpha, putative [Ricinus communis]
swissprot
ID Q8LPK4
description AP-2 complex subunit alpha-2 OS=Arabidopsis thaliana GN=ALPHAC-AD PE=1 SV=1
trembl
ID B9SN68
description AP-2 complex subunit alpha, putative OS=Ricinus communis GN=RCOM_1186100 PE=4 SV=1
Gene Ontology
ID GO:0030131
description ap-2 complex subunit alpha-1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07654: 41406-45867 , PASA_asmbl_07655: 56396-56907
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_012506_030 0.0 - - AP-2 complex subunit alpha, putative [Ricinus communis]
2 Hb_002326_040 0.0507576627 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
3 Hb_000441_220 0.0520882105 - - PREDICTED: histidinol dehydrogenase, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_005137_040 0.0553061247 - - hypothetical protein JCGZ_12324 [Jatropha curcas]
5 Hb_005918_010 0.0564342899 - - PREDICTED: protein ROOT HAIR DEFECTIVE 3-like [Jatropha curcas]
6 Hb_000085_170 0.0604924675 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]
7 Hb_002811_270 0.0635781219 - - PREDICTED: peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase [Jatropha curcas]
8 Hb_105105_010 0.0647293972 - - PREDICTED: coiled-coil domain-containing protein 132 [Jatropha curcas]
9 Hb_001226_150 0.0659364778 - - PREDICTED: serine/threonine-protein kinase 38-like isoform X3 [Jatropha curcas]
10 Hb_004109_320 0.066325904 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
11 Hb_001377_310 0.0667610241 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
12 Hb_004586_060 0.0672767949 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
13 Hb_000477_050 0.0673572938 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
14 Hb_001518_080 0.0679864145 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105646545 [Jatropha curcas]
15 Hb_013399_020 0.0684258539 - - PREDICTED: developmentally-regulated G-protein 2 [Jatropha curcas]
16 Hb_000214_050 0.0686911449 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
17 Hb_000856_040 0.069071239 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105640470 [Jatropha curcas]
18 Hb_000373_080 0.0702977492 - - PREDICTED: serine decarboxylase [Jatropha curcas]
19 Hb_003861_050 0.0703832996 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
20 Hb_007894_150 0.0708701018 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]

Gene co-expression network

sample Hb_012506_030 Hb_012506_030 Hb_002326_040 Hb_002326_040 Hb_012506_030--Hb_002326_040 Hb_000441_220 Hb_000441_220 Hb_012506_030--Hb_000441_220 Hb_005137_040 Hb_005137_040 Hb_012506_030--Hb_005137_040 Hb_005918_010 Hb_005918_010 Hb_012506_030--Hb_005918_010 Hb_000085_170 Hb_000085_170 Hb_012506_030--Hb_000085_170 Hb_002811_270 Hb_002811_270 Hb_012506_030--Hb_002811_270 Hb_000214_050 Hb_000214_050 Hb_002326_040--Hb_000214_050 Hb_002326_040--Hb_002811_270 Hb_001518_080 Hb_001518_080 Hb_002326_040--Hb_001518_080 Hb_007248_030 Hb_007248_030 Hb_002326_040--Hb_007248_030 Hb_023313_040 Hb_023313_040 Hb_002326_040--Hb_023313_040 Hb_020378_030 Hb_020378_030 Hb_000441_220--Hb_020378_030 Hb_001221_080 Hb_001221_080 Hb_000441_220--Hb_001221_080 Hb_013399_020 Hb_013399_020 Hb_000441_220--Hb_013399_020 Hb_004586_220 Hb_004586_220 Hb_000441_220--Hb_004586_220 Hb_001205_120 Hb_001205_120 Hb_000441_220--Hb_001205_120 Hb_005137_040--Hb_005918_010 Hb_000637_110 Hb_000637_110 Hb_005137_040--Hb_000637_110 Hb_105105_010 Hb_105105_010 Hb_005137_040--Hb_105105_010 Hb_000088_170 Hb_000088_170 Hb_005137_040--Hb_000088_170 Hb_005137_040--Hb_000441_220 Hb_003544_060 Hb_003544_060 Hb_005918_010--Hb_003544_060 Hb_001153_190 Hb_001153_190 Hb_005918_010--Hb_001153_190 Hb_005918_010--Hb_105105_010 Hb_005918_010--Hb_000441_220 Hb_000510_360 Hb_000510_360 Hb_000085_170--Hb_000510_360 Hb_000702_090 Hb_000702_090 Hb_000085_170--Hb_000702_090 Hb_000321_140 Hb_000321_140 Hb_000085_170--Hb_000321_140 Hb_033312_040 Hb_033312_040 Hb_000085_170--Hb_033312_040 Hb_002326_110 Hb_002326_110 Hb_000085_170--Hb_002326_110 Hb_002811_270--Hb_000214_050 Hb_002811_270--Hb_001518_080 Hb_000373_080 Hb_000373_080 Hb_002811_270--Hb_000373_080 Hb_003186_020 Hb_003186_020 Hb_002811_270--Hb_003186_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.60997 9.36281 13.9867 11.6119 8.60268 9.02492
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.94487 6.08723 9.26574 10.3008 8.57451

CAGE analysis