Hb_023313_040

Information

Type -
Description -
Location Contig23313: 52336-56904
Sequence    

Annotation

kegg
ID rcu:RCOM_1016710
description hypothetical protein
nr
ID XP_012080607.1
description PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KG28
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13717 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24494: 52438-56896 , PASA_asmbl_24495: 53455-53596
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_023313_040 0.0 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
2 Hb_000019_190 0.0516727286 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
3 Hb_000702_090 0.0567689487 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
4 Hb_001002_060 0.0584820156 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
5 Hb_025668_010 0.0622837162 - - unnamed protein product [Coffea canephora]
6 Hb_000803_270 0.0649458071 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
7 Hb_000006_010 0.0651274643 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001405_210 0.0652107845 - - hypothetical protein JCGZ_22540 [Jatropha curcas]
9 Hb_002326_040 0.0657729775 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
10 Hb_007007_040 0.0693629218 desease resistance Gene Name: ArsA_ATPase arsenical pump-driving atpase, putative [Ricinus communis]
11 Hb_001227_120 0.0699633545 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
12 Hb_001677_200 0.0716656954 - - conserved hypothetical protein [Ricinus communis]
13 Hb_007248_030 0.0731227418 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
14 Hb_004586_060 0.0734056136 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
15 Hb_005730_010 0.0743178943 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
16 Hb_000963_040 0.0745541323 - - PREDICTED: protein disulfide isomerase-like 1-4 [Jatropha curcas]
17 Hb_012506_030 0.0753329096 - - AP-2 complex subunit alpha, putative [Ricinus communis]
18 Hb_002014_010 0.0759034202 - - Uncharacterized protein isoform 1 [Theobroma cacao]
19 Hb_007413_040 0.0759679757 - - myo inositol monophosphatase, putative [Ricinus communis]
20 Hb_000085_170 0.0761608923 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_023313_040 Hb_023313_040 Hb_000019_190 Hb_000019_190 Hb_023313_040--Hb_000019_190 Hb_000702_090 Hb_000702_090 Hb_023313_040--Hb_000702_090 Hb_001002_060 Hb_001002_060 Hb_023313_040--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_023313_040--Hb_025668_010 Hb_000803_270 Hb_000803_270 Hb_023313_040--Hb_000803_270 Hb_000006_010 Hb_000006_010 Hb_023313_040--Hb_000006_010 Hb_002014_010 Hb_002014_010 Hb_000019_190--Hb_002014_010 Hb_001227_120 Hb_001227_120 Hb_000019_190--Hb_001227_120 Hb_007007_040 Hb_007007_040 Hb_000019_190--Hb_007007_040 Hb_007248_030 Hb_007248_030 Hb_000019_190--Hb_007248_030 Hb_163175_010 Hb_163175_010 Hb_000019_190--Hb_163175_010 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_000702_090--Hb_007248_030 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_004586_060 Hb_004586_060 Hb_000702_090--Hb_004586_060 Hb_016172_030 Hb_016172_030 Hb_000702_090--Hb_016172_030 Hb_000362_170 Hb_000362_170 Hb_001002_060--Hb_000362_170 Hb_000737_030 Hb_000737_030 Hb_001002_060--Hb_000737_030 Hb_001002_060--Hb_025668_010 Hb_000261_210 Hb_000261_210 Hb_001002_060--Hb_000261_210 Hb_005895_010 Hb_005895_010 Hb_001002_060--Hb_005895_010 Hb_004096_060 Hb_004096_060 Hb_025668_010--Hb_004096_060 Hb_005730_010 Hb_005730_010 Hb_025668_010--Hb_005730_010 Hb_002942_210 Hb_002942_210 Hb_025668_010--Hb_002942_210 Hb_025668_010--Hb_000261_210 Hb_004109_320 Hb_004109_320 Hb_000803_270--Hb_004109_320 Hb_000803_270--Hb_000006_010 Hb_002889_010 Hb_002889_010 Hb_000803_270--Hb_002889_010 Hb_000803_270--Hb_000702_090 Hb_183510_020 Hb_183510_020 Hb_000803_270--Hb_183510_020 Hb_001009_320 Hb_001009_320 Hb_000006_010--Hb_001009_320 Hb_000139_260 Hb_000139_260 Hb_000006_010--Hb_000139_260 Hb_000522_170 Hb_000522_170 Hb_000006_010--Hb_000522_170 Hb_000336_210 Hb_000336_210 Hb_000006_010--Hb_000336_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.14541 10.894 20.6162 19.5612 12.7866 10.6639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.12827 9.12507 8.07814 12.6937 10.8502

CAGE analysis