Hb_002942_210

Information

Type -
Description -
Location Contig2942: 202361-208791
Sequence    

Annotation

kegg
ID rcu:RCOM_1504540
description alpha-2,8-sialyltransferase 8b, putative
nr
ID XP_002511111.1
description alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
swissprot
ID Q6KB58
description CMP-N-acetylneuraminate-beta-galactosamide-alpha-2,3-sialyltransferase 2 OS=Pan troglodytes GN=ST3GAL2 PE=2 SV=1
trembl
ID B9RA86
description Alpha-2,8-sialyltransferase 8b, putative OS=Ricinus communis GN=RCOM_1504540 PE=4 SV=1
Gene Ontology
ID GO:0005768
description alpha- -sialyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30814: 202500-208783 , PASA_asmbl_30815: 203271-203611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002942_210 0.0 - - alpha-2,8-sialyltransferase 8b, putative [Ricinus communis]
2 Hb_002014_040 0.0690484311 - - site-1 protease, putative [Ricinus communis]
3 Hb_139002_010 0.0707428566 - - alpha-(1,4)-fucosyltransferase, putative [Ricinus communis]
4 Hb_008921_010 0.0731950669 - - PREDICTED: uncharacterized protein LOC105629323 [Jatropha curcas]
5 Hb_025668_010 0.0744365508 - - unnamed protein product [Coffea canephora]
6 Hb_000847_080 0.0749071053 - - PREDICTED: HAUS augmin-like complex subunit 3 [Jatropha curcas]
7 Hb_001931_030 0.0779086869 - - PREDICTED: T-complex protein 1 subunit eta-like [Nelumbo nucifera]
8 Hb_000139_260 0.0793169412 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]
9 Hb_000362_170 0.0799870214 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
10 Hb_005730_010 0.0822681865 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
11 Hb_001002_060 0.0842674846 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
12 Hb_000589_190 0.0848055463 - - PREDICTED: actin-related protein 5 isoform X1 [Jatropha curcas]
13 Hb_000130_420 0.0850883969 - - PREDICTED: uncharacterized protein LOC105635728 [Jatropha curcas]
14 Hb_020141_040 0.0858803866 transcription factor TF Family: STAT conserved hypothetical protein [Ricinus communis]
15 Hb_000737_030 0.0874690883 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
16 Hb_003436_020 0.087670359 transcription factor TF Family: Orphans PREDICTED: uncharacterized protein LOC105636276 isoform X2 [Jatropha curcas]
17 Hb_055235_020 0.0898741712 - - PREDICTED: probable mitochondrial saccharopine dehydrogenase-like oxidoreductase At5g39410 isoform X1 [Jatropha curcas]
18 Hb_011972_020 0.0899451372 - - protein binding protein, putative [Ricinus communis]
19 Hb_000006_010 0.0905254495 - - conserved hypothetical protein [Ricinus communis]
20 Hb_010272_010 0.0910585247 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3 [Jatropha curcas]

Gene co-expression network

sample Hb_002942_210 Hb_002942_210 Hb_002014_040 Hb_002014_040 Hb_002942_210--Hb_002014_040 Hb_139002_010 Hb_139002_010 Hb_002942_210--Hb_139002_010 Hb_008921_010 Hb_008921_010 Hb_002942_210--Hb_008921_010 Hb_025668_010 Hb_025668_010 Hb_002942_210--Hb_025668_010 Hb_000847_080 Hb_000847_080 Hb_002942_210--Hb_000847_080 Hb_001931_030 Hb_001931_030 Hb_002942_210--Hb_001931_030 Hb_000362_170 Hb_000362_170 Hb_002014_040--Hb_000362_170 Hb_103747_020 Hb_103747_020 Hb_002014_040--Hb_103747_020 Hb_011972_020 Hb_011972_020 Hb_002014_040--Hb_011972_020 Hb_010272_010 Hb_010272_010 Hb_002014_040--Hb_010272_010 Hb_008226_090 Hb_008226_090 Hb_002014_040--Hb_008226_090 Hb_005895_010 Hb_005895_010 Hb_002014_040--Hb_005895_010 Hb_000139_260 Hb_000139_260 Hb_139002_010--Hb_000139_260 Hb_004912_030 Hb_004912_030 Hb_139002_010--Hb_004912_030 Hb_139002_010--Hb_008921_010 Hb_003436_020 Hb_003436_020 Hb_139002_010--Hb_003436_020 Hb_139002_010--Hb_002014_040 Hb_002054_050 Hb_002054_050 Hb_008921_010--Hb_002054_050 Hb_000959_230 Hb_000959_230 Hb_008921_010--Hb_000959_230 Hb_000589_190 Hb_000589_190 Hb_008921_010--Hb_000589_190 Hb_001804_110 Hb_001804_110 Hb_008921_010--Hb_001804_110 Hb_023313_040 Hb_023313_040 Hb_025668_010--Hb_023313_040 Hb_001002_060 Hb_001002_060 Hb_025668_010--Hb_001002_060 Hb_004096_060 Hb_004096_060 Hb_025668_010--Hb_004096_060 Hb_005730_010 Hb_005730_010 Hb_025668_010--Hb_005730_010 Hb_000261_210 Hb_000261_210 Hb_025668_010--Hb_000261_210 Hb_077026_010 Hb_077026_010 Hb_000847_080--Hb_077026_010 Hb_000254_100 Hb_000254_100 Hb_000847_080--Hb_000254_100 Hb_138435_010 Hb_138435_010 Hb_000847_080--Hb_138435_010 Hb_002326_110 Hb_002326_110 Hb_000847_080--Hb_002326_110 Hb_001153_210 Hb_001153_210 Hb_000847_080--Hb_001153_210 Hb_003186_020 Hb_003186_020 Hb_000847_080--Hb_003186_020 Hb_007413_040 Hb_007413_040 Hb_001931_030--Hb_007413_040 Hb_001931_030--Hb_005730_010 Hb_001931_030--Hb_025668_010 Hb_000803_270 Hb_000803_270 Hb_001931_030--Hb_000803_270 Hb_001931_030--Hb_000847_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.66718 7.33678 12.2763 9.67196 11.7833 5.95757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.59316 4.17334 2.9607 6.55438 6.96497

CAGE analysis