Hb_000803_270

Information

Type -
Description -
Location Contig803: 299648-314956
Sequence    

Annotation

kegg
ID pop:POPTR_0009s05380g
description POPTRDRAFT_722993; hypothetical protein
nr
ID XP_012090059.1
description PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
swissprot
ID Q9SIU2
description Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2
trembl
ID A0A067JRI3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25965 PE=4 SV=1
Gene Ontology
ID GO:0005846
description nuclear cap-binding protein subunit 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58916: 315651-315972
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000803_270 0.0 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
2 Hb_004109_320 0.0616016496 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
3 Hb_023313_040 0.0649458071 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
4 Hb_000006_010 0.0661603048 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002889_010 0.0675050364 - - ubx domain-containing, putative [Ricinus communis]
6 Hb_000702_090 0.0681936574 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
7 Hb_183510_020 0.0690183447 - - coated vesicle membrane protein, putative [Ricinus communis]
8 Hb_000336_210 0.0690598772 - - PREDICTED: probable adenylate kinase 7, mitochondrial [Jatropha curcas]
9 Hb_000120_280 0.0691768396 - - PREDICTED: protein transport protein SEC23 [Jatropha curcas]
10 Hb_002014_010 0.0692425407 - - Uncharacterized protein isoform 1 [Theobroma cacao]
11 Hb_016777_040 0.0692734948 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
12 Hb_001720_040 0.0698168428 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000477_050 0.0700518426 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
14 Hb_163175_010 0.0708806313 - - hypothetical protein CISIN_1g036035mg, partial [Citrus sinensis]
15 Hb_004586_060 0.0711306968 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
16 Hb_006189_020 0.0712839719 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
17 Hb_002272_050 0.0721923771 - - microsomal signal peptidase 23 kD subunit, putative [Ricinus communis]
18 Hb_000019_190 0.0723741124 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
19 Hb_171900_090 0.0728305875 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007248_030 0.0738606366 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]

Gene co-expression network

sample Hb_000803_270 Hb_000803_270 Hb_004109_320 Hb_004109_320 Hb_000803_270--Hb_004109_320 Hb_023313_040 Hb_023313_040 Hb_000803_270--Hb_023313_040 Hb_000006_010 Hb_000006_010 Hb_000803_270--Hb_000006_010 Hb_002889_010 Hb_002889_010 Hb_000803_270--Hb_002889_010 Hb_000702_090 Hb_000702_090 Hb_000803_270--Hb_000702_090 Hb_183510_020 Hb_183510_020 Hb_000803_270--Hb_183510_020 Hb_007894_150 Hb_007894_150 Hb_004109_320--Hb_007894_150 Hb_000365_230 Hb_000365_230 Hb_004109_320--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_004109_320--Hb_164390_010 Hb_002014_010 Hb_002014_010 Hb_004109_320--Hb_002014_010 Hb_002849_130 Hb_002849_130 Hb_004109_320--Hb_002849_130 Hb_000477_050 Hb_000477_050 Hb_004109_320--Hb_000477_050 Hb_000019_190 Hb_000019_190 Hb_023313_040--Hb_000019_190 Hb_023313_040--Hb_000702_090 Hb_001002_060 Hb_001002_060 Hb_023313_040--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_023313_040--Hb_025668_010 Hb_023313_040--Hb_000006_010 Hb_001009_320 Hb_001009_320 Hb_000006_010--Hb_001009_320 Hb_000139_260 Hb_000139_260 Hb_000006_010--Hb_000139_260 Hb_000522_170 Hb_000522_170 Hb_000006_010--Hb_000522_170 Hb_000336_210 Hb_000336_210 Hb_000006_010--Hb_000336_210 Hb_016777_040 Hb_016777_040 Hb_002889_010--Hb_016777_040 Hb_003861_050 Hb_003861_050 Hb_002889_010--Hb_003861_050 Hb_002471_240 Hb_002471_240 Hb_002889_010--Hb_002471_240 Hb_001377_310 Hb_001377_310 Hb_002889_010--Hb_001377_310 Hb_000816_250 Hb_000816_250 Hb_002889_010--Hb_000816_250 Hb_000134_270 Hb_000134_270 Hb_002889_010--Hb_000134_270 Hb_021165_010 Hb_021165_010 Hb_000702_090--Hb_021165_010 Hb_007248_030 Hb_007248_030 Hb_000702_090--Hb_007248_030 Hb_000085_170 Hb_000085_170 Hb_000702_090--Hb_000085_170 Hb_004586_060 Hb_004586_060 Hb_000702_090--Hb_004586_060 Hb_016172_030 Hb_016172_030 Hb_000702_090--Hb_016172_030 Hb_000025_690 Hb_000025_690 Hb_183510_020--Hb_000025_690 Hb_005867_070 Hb_005867_070 Hb_183510_020--Hb_005867_070 Hb_000011_100 Hb_000011_100 Hb_183510_020--Hb_000011_100 Hb_000006_040 Hb_000006_040 Hb_183510_020--Hb_000006_040 Hb_000710_040 Hb_000710_040 Hb_183510_020--Hb_000710_040 Hb_001301_150 Hb_001301_150 Hb_183510_020--Hb_001301_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.517 6.14746 9.42967 7.85693 6.91984 5.0182
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.17273 5.54963 3.52909 7.88623 6.20677

CAGE analysis