Hb_001377_310

Information

Type transcription factor
Description TF Family: Coactivator p15
Location Contig1377: 296612-299708
Sequence    

Annotation

kegg
ID fve:101309666
description uncharacterized protein LOC101309666
nr
ID XP_012083199.1
description PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
swissprot
ID O65155
description RNA polymerase II transcriptional coactivator KELP OS=Arabidopsis thaliana GN=KELP PE=1 SV=1
trembl
ID A0A067K9I4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_14250 PE=4 SV=1
Gene Ontology
ID GO:0003677
description rna polymerase ii transcriptional coactivator kelp

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_10423: 296711-297611 , PASA_asmbl_10424: 297653-298659
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001377_310 0.0 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
2 Hb_000035_110 0.0474938008 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
3 Hb_000170_090 0.0486646692 - - PREDICTED: UDP-sugar pyrophosphorylase [Jatropha curcas]
4 Hb_005460_050 0.0505463934 - - COR413-PM2, putative [Ricinus communis]
5 Hb_000373_080 0.0514778307 - - PREDICTED: serine decarboxylase [Jatropha curcas]
6 Hb_003861_050 0.0553062023 - - PREDICTED: uncharacterized protein LOC105650779 [Jatropha curcas]
7 Hb_004586_060 0.0561162091 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
8 Hb_016777_040 0.0584572949 - - PREDICTED: DNA polymerase eta-like [Jatropha curcas]
9 Hb_000214_050 0.060084502 - - PREDICTED: protein IQ-DOMAIN 1 isoform X1 [Jatropha curcas]
10 Hb_015807_050 0.0616676046 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
11 Hb_004020_040 0.0631038915 - - PREDICTED: GTP-binding protein At3g49725, chloroplastic [Jatropha curcas]
12 Hb_002889_010 0.0638738368 - - ubx domain-containing, putative [Ricinus communis]
13 Hb_001635_160 0.0652577543 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
14 Hb_001005_030 0.0653397255 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH4 isoform X3 [Jatropha curcas]
15 Hb_001856_180 0.0661849743 - - PREDICTED: eukaryotic translation initiation factor 3 subunit M [Jatropha curcas]
16 Hb_000737_030 0.0663102461 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
17 Hb_008568_020 0.066620107 - - PREDICTED: uncharacterized protein LOC105122325 isoform X3 [Populus euphratica]
18 Hb_002805_190 0.0666971424 - - spliceosome associated protein, putative [Ricinus communis]
19 Hb_012506_030 0.0667610241 - - AP-2 complex subunit alpha, putative [Ricinus communis]
20 Hb_000976_140 0.0669565942 - - PREDICTED: uncharacterized protein LOC105646208 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001377_310 Hb_001377_310 Hb_000035_110 Hb_000035_110 Hb_001377_310--Hb_000035_110 Hb_000170_090 Hb_000170_090 Hb_001377_310--Hb_000170_090 Hb_005460_050 Hb_005460_050 Hb_001377_310--Hb_005460_050 Hb_000373_080 Hb_000373_080 Hb_001377_310--Hb_000373_080 Hb_003861_050 Hb_003861_050 Hb_001377_310--Hb_003861_050 Hb_004586_060 Hb_004586_060 Hb_001377_310--Hb_004586_060 Hb_000005_220 Hb_000005_220 Hb_000035_110--Hb_000005_220 Hb_004020_040 Hb_004020_040 Hb_000035_110--Hb_004020_040 Hb_001635_160 Hb_001635_160 Hb_000035_110--Hb_001635_160 Hb_000035_110--Hb_005460_050 Hb_010150_020 Hb_010150_020 Hb_000035_110--Hb_010150_020 Hb_105328_020 Hb_105328_020 Hb_000170_090--Hb_105328_020 Hb_004586_220 Hb_004586_220 Hb_000170_090--Hb_004586_220 Hb_013399_020 Hb_013399_020 Hb_000170_090--Hb_013399_020 Hb_000976_140 Hb_000976_140 Hb_000170_090--Hb_000976_140 Hb_000345_160 Hb_000345_160 Hb_000170_090--Hb_000345_160 Hb_032990_010 Hb_032990_010 Hb_005460_050--Hb_032990_010 Hb_000933_010 Hb_000933_010 Hb_005460_050--Hb_000933_010 Hb_005460_050--Hb_001635_160 Hb_003897_040 Hb_003897_040 Hb_005460_050--Hb_003897_040 Hb_007062_040 Hb_007062_040 Hb_005460_050--Hb_007062_040 Hb_003186_020 Hb_003186_020 Hb_000373_080--Hb_003186_020 Hb_000317_510 Hb_000317_510 Hb_000373_080--Hb_000317_510 Hb_001005_030 Hb_001005_030 Hb_000373_080--Hb_001005_030 Hb_000214_050 Hb_000214_050 Hb_000373_080--Hb_000214_050 Hb_000362_170 Hb_000362_170 Hb_000373_080--Hb_000362_170 Hb_005867_070 Hb_005867_070 Hb_003861_050--Hb_005867_070 Hb_004994_010 Hb_004994_010 Hb_003861_050--Hb_004994_010 Hb_002889_010 Hb_002889_010 Hb_003861_050--Hb_002889_010 Hb_002805_190 Hb_002805_190 Hb_003861_050--Hb_002805_190 Hb_015807_050 Hb_015807_050 Hb_003861_050--Hb_015807_050 Hb_007248_030 Hb_007248_030 Hb_004586_060--Hb_007248_030 Hb_004586_060--Hb_007062_040 Hb_000046_570 Hb_000046_570 Hb_004586_060--Hb_000046_570 Hb_000702_090 Hb_000702_090 Hb_004586_060--Hb_000702_090 Hb_004586_060--Hb_005460_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.45239 2.46054 3.41061 3.13281 2.3212 3.21738
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.99235 1.69672 1.67713 2.59091 2.33616

CAGE analysis