Hb_003897_040

Information

Type -
Description -
Location Contig3897: 67395-71308
Sequence    

Annotation

kegg
ID rcu:RCOM_1445980
description translocon-associated protein, beta subunit precursor, putative
nr
ID XP_002512872.1
description translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
swissprot
ID P23438
description Translocon-associated protein subunit beta OS=Canis familiaris GN=SSR2 PE=1 SV=1
trembl
ID B9RH13
description Translocon-associated protein, beta subunit, putative OS=Ricinus communis GN=RCOM_1445980 PE=4 SV=1
Gene Ontology
ID GO:0005774
description translocon-associated protein subunit beta

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_39049: 67425-71310 , PASA_asmbl_39050: 67418-71310
cDNA
(Sanger)
(ID:Location)		 050_J13.ab1: 67418-70908

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003897_040 0.0 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
2 Hb_000933_010 0.055352259 - - -
3 Hb_005460_050 0.0567693456 - - COR413-PM2, putative [Ricinus communis]
4 Hb_003038_120 0.0655448578 - - rer1 protein, putative [Ricinus communis]
5 Hb_002398_030 0.0682995192 - - amino acid binding protein, putative [Ricinus communis]
6 Hb_000261_230 0.0752891313 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
7 Hb_032990_010 0.0767987237 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
8 Hb_001377_310 0.0788477466 transcription factor TF Family: Coactivator p15 PREDICTED: uncharacterized protein LOC105642839 [Jatropha curcas]
9 Hb_000035_110 0.0792782868 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
10 Hb_000776_100 0.0818557253 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
11 Hb_000034_080 0.0825948234 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
12 Hb_003096_060 0.0841825086 - - PREDICTED: LMBR1 domain-containing protein 2 homolog A [Jatropha curcas]
13 Hb_000737_030 0.0851747791 - - PREDICTED: probable galacturonosyltransferase 3 isoform X1 [Jatropha curcas]
14 Hb_000959_250 0.0862093807 - - PREDICTED: ribonucleoside-diphosphate reductase large subunit [Jatropha curcas]
15 Hb_007062_040 0.0896539493 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
16 Hb_007441_020 0.0902462893 - - Rab6 [Hevea brasiliensis]
17 Hb_000236_490 0.0909686203 - - 20 kD nuclear cap binding protein, putative [Ricinus communis]
18 Hb_010150_020 0.0914866363 transcription factor TF Family: HMG PREDICTED: FACT complex subunit SSRP1 [Jatropha curcas]
19 Hb_000101_380 0.0919156592 - - PREDICTED: clathrin light chain 2-like isoform X2 [Populus euphratica]
20 Hb_005723_020 0.0923496703 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_003897_040 Hb_003897_040 Hb_000933_010 Hb_000933_010 Hb_003897_040--Hb_000933_010 Hb_005460_050 Hb_005460_050 Hb_003897_040--Hb_005460_050 Hb_003038_120 Hb_003038_120 Hb_003897_040--Hb_003038_120 Hb_002398_030 Hb_002398_030 Hb_003897_040--Hb_002398_030 Hb_000261_230 Hb_000261_230 Hb_003897_040--Hb_000261_230 Hb_032990_010 Hb_032990_010 Hb_003897_040--Hb_032990_010 Hb_000933_010--Hb_005460_050 Hb_003549_090 Hb_003549_090 Hb_000933_010--Hb_003549_090 Hb_005723_020 Hb_005723_020 Hb_000933_010--Hb_005723_020 Hb_000933_010--Hb_002398_030 Hb_008226_090 Hb_008226_090 Hb_000933_010--Hb_008226_090 Hb_001377_310 Hb_001377_310 Hb_005460_050--Hb_001377_310 Hb_005460_050--Hb_032990_010 Hb_001635_160 Hb_001635_160 Hb_005460_050--Hb_001635_160 Hb_007062_040 Hb_007062_040 Hb_005460_050--Hb_007062_040 Hb_000776_100 Hb_000776_100 Hb_003038_120--Hb_000776_100 Hb_003038_120--Hb_032990_010 Hb_003096_060 Hb_003096_060 Hb_003038_120--Hb_003096_060 Hb_003038_120--Hb_005460_050 Hb_006588_070 Hb_006588_070 Hb_003038_120--Hb_006588_070 Hb_008120_030 Hb_008120_030 Hb_002398_030--Hb_008120_030 Hb_000445_050 Hb_000445_050 Hb_002398_030--Hb_000445_050 Hb_002398_030--Hb_003549_090 Hb_058999_030 Hb_058999_030 Hb_002398_030--Hb_058999_030 Hb_000035_110 Hb_000035_110 Hb_002398_030--Hb_000035_110 Hb_002398_030--Hb_001635_160 Hb_000022_050 Hb_000022_050 Hb_000261_230--Hb_000022_050 Hb_000261_230--Hb_032990_010 Hb_000261_230--Hb_005460_050 Hb_005797_010 Hb_005797_010 Hb_000261_230--Hb_005797_010 Hb_002739_020 Hb_002739_020 Hb_000261_230--Hb_002739_020 Hb_032990_010--Hb_007062_040 Hb_000737_030 Hb_000737_030 Hb_032990_010--Hb_000737_030 Hb_000046_570 Hb_000046_570 Hb_032990_010--Hb_000046_570 Hb_004586_060 Hb_004586_060 Hb_032990_010--Hb_004586_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.4109 57.2064 80.9583 83.6208 62.6119 85.4411
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.9178 30.9615 27.1341 60.2293 33.8402

CAGE analysis