Hb_000261_230

Information

Type -
Description -
Location Contig261: 172434-180088
Sequence    

Annotation

kegg
ID vvi:100248761
description UBX domain-containing protein 4
nr
ID XP_002273725.1
description PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
swissprot
ID Q2KIJ6
description UBX domain-containing protein 6 OS=Bos taurus GN=UBXN6 PE=2 SV=1
trembl
ID D7SNI5
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_05s0029g01370 PE=4 SV=1
Gene Ontology
ID GO:0005829
description ubx domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27267: 172460-180010
cDNA
(Sanger)
(ID:Location)		 049_G20.ab1: 176467-180010

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_230 0.0 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
2 Hb_000022_050 0.0606325196 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
3 Hb_003897_040 0.0752891313 - - translocon-associated protein, beta subunit precursor, putative [Ricinus communis]
4 Hb_032990_010 0.0759725334 - - PREDICTED: fanconi-associated nuclease 1 homolog [Jatropha curcas]
5 Hb_005460_050 0.0767401031 - - COR413-PM2, putative [Ricinus communis]
6 Hb_005797_010 0.0845091616 - - PREDICTED: lysophospholipid acyltransferase 1-like [Jatropha curcas]
7 Hb_002739_020 0.0847031184 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
8 Hb_003038_120 0.0870284478 - - rer1 protein, putative [Ricinus communis]
9 Hb_001123_030 0.0911945356 - - ABC transporter family protein [Hevea brasiliensis]
10 Hb_000035_110 0.0926648791 - - PREDICTED: transcription initiation factor TFIID subunit 5 [Jatropha curcas]
11 Hb_007062_040 0.0932921908 - - ADP-ribosylation factor GTPase-activating protein AGD2 [Morus notabilis]
12 Hb_003688_090 0.0940245456 - - PREDICTED: ATP synthase subunit gamma, mitochondrial [Jatropha curcas]
13 Hb_000302_310 0.0964992734 - - PREDICTED: glutaminyl-peptide cyclotransferase-like [Jatropha curcas]
14 Hb_000034_080 0.0983700179 - - PREDICTED: MADS-box protein AGL24-like isoform X1 [Jatropha curcas]
15 Hb_001635_160 0.0988336803 - - hypothetical protein JCGZ_24810 [Jatropha curcas]
16 Hb_000009_400 0.0989805056 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
17 Hb_002073_190 0.0992848465 - - PREDICTED: uncharacterized protein LOC105649812 isoform X1 [Jatropha curcas]
18 Hb_000046_570 0.0995199262 - - hypothetical protein JCGZ_01998 [Jatropha curcas]
19 Hb_006588_170 0.0996127506 - - PREDICTED: OTU domain-containing protein At3g57810 [Jatropha curcas]
20 Hb_001141_310 0.100072235 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]

Gene co-expression network

sample Hb_000261_230 Hb_000261_230 Hb_000022_050 Hb_000022_050 Hb_000261_230--Hb_000022_050 Hb_003897_040 Hb_003897_040 Hb_000261_230--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_000261_230--Hb_032990_010 Hb_005460_050 Hb_005460_050 Hb_000261_230--Hb_005460_050 Hb_005797_010 Hb_005797_010 Hb_000261_230--Hb_005797_010 Hb_002739_020 Hb_002739_020 Hb_000261_230--Hb_002739_020 Hb_000022_050--Hb_005797_010 Hb_000009_400 Hb_000009_400 Hb_000022_050--Hb_000009_400 Hb_012322_020 Hb_012322_020 Hb_000022_050--Hb_012322_020 Hb_001829_040 Hb_001829_040 Hb_000022_050--Hb_001829_040 Hb_003929_170 Hb_003929_170 Hb_000022_050--Hb_003929_170 Hb_000933_010 Hb_000933_010 Hb_003897_040--Hb_000933_010 Hb_003897_040--Hb_005460_050 Hb_003038_120 Hb_003038_120 Hb_003897_040--Hb_003038_120 Hb_002398_030 Hb_002398_030 Hb_003897_040--Hb_002398_030 Hb_003897_040--Hb_032990_010 Hb_007062_040 Hb_007062_040 Hb_032990_010--Hb_007062_040 Hb_032990_010--Hb_005460_050 Hb_000737_030 Hb_000737_030 Hb_032990_010--Hb_000737_030 Hb_032990_010--Hb_003038_120 Hb_000046_570 Hb_000046_570 Hb_032990_010--Hb_000046_570 Hb_004586_060 Hb_004586_060 Hb_032990_010--Hb_004586_060 Hb_001377_310 Hb_001377_310 Hb_005460_050--Hb_001377_310 Hb_005460_050--Hb_000933_010 Hb_001635_160 Hb_001635_160 Hb_005460_050--Hb_001635_160 Hb_005460_050--Hb_007062_040 Hb_007481_010 Hb_007481_010 Hb_005797_010--Hb_007481_010 Hb_002728_080 Hb_002728_080 Hb_005797_010--Hb_002728_080 Hb_000139_530 Hb_000139_530 Hb_005797_010--Hb_000139_530 Hb_004102_170 Hb_004102_170 Hb_005797_010--Hb_004102_170 Hb_023313_030 Hb_023313_030 Hb_005797_010--Hb_023313_030 Hb_005797_010--Hb_000009_400 Hb_003376_330 Hb_003376_330 Hb_002739_020--Hb_003376_330 Hb_007336_010 Hb_007336_010 Hb_002739_020--Hb_007336_010 Hb_028512_020 Hb_028512_020 Hb_002739_020--Hb_028512_020 Hb_004117_110 Hb_004117_110 Hb_002739_020--Hb_004117_110 Hb_001492_020 Hb_001492_020 Hb_002739_020--Hb_001492_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
42.0418 41.7921 46.0902 73.5364 38.9404 57.5111
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
47.8961 27.9749 15.7722 41.601 27.0468

CAGE analysis