Hb_001829_040

Information

Type -
Description -
Location Contig1829: 44279-44841
Sequence    

Annotation

kegg
ID pop:POPTR_0015s080101
description POPTRDRAFT_824631; hypothetical protein
nr
ID XP_012065190.1
description PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
swissprot
ID O64740
description Protein transport protein SEC13 homolog B OS=Arabidopsis thaliana GN=SEC13B PE=1 SV=1
trembl
ID A0A067LI06
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20869 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001829_040 0.0 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
2 Hb_011671_480 0.0912462859 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000022_050 0.0977743444 - - PREDICTED: retinol dehydrogenase 11-like isoform X2 [Glycine max]
4 Hb_002983_080 0.1003222536 - - acetylornithine aminotransferase, partial [Prunus persica]
5 Hb_000260_720 0.1016277029 - - PREDICTED: ADP-ribosylation factor-like, partial [Nicotiana tomentosiformis]
6 Hb_005686_120 0.116376186 - - -
7 Hb_000261_230 0.1165145527 - - PREDICTED: UBX domain-containing protein 4 [Vitis vinifera]
8 Hb_001911_040 0.116789833 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
9 Hb_000331_090 0.1187435376 - - hypothetical protein PRUPE_ppa010923mg [Prunus persica]
10 Hb_003929_170 0.1191313671 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
11 Hb_162060_010 0.122448822 - - conserved hypothetical protein [Ricinus communis]
12 Hb_086639_080 0.1239887184 - - conserved hypothetical protein [Ricinus communis]
13 Hb_124373_010 0.1242183835 - - PREDICTED: BRCA1-A complex subunit BRE isoform X1 [Jatropha curcas]
14 Hb_005381_020 0.1266832224 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
15 Hb_004883_050 0.1267270841 - - PREDICTED: probable UDP-arabinopyranose mutase 5 isoform X2 [Vitis vinifera]
16 Hb_000107_230 0.1267621949 - - unknown [Medicago truncatula]
17 Hb_085972_010 0.1272724424 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
18 Hb_005535_080 0.1275736838 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
19 Hb_000207_150 0.127583367 - - PREDICTED: uncharacterized membrane protein At4g09580 [Jatropha curcas]
20 Hb_000096_120 0.1284823818 - - PREDICTED: uncharacterized protein LOC105639993 [Jatropha curcas]

Gene co-expression network

sample Hb_001829_040 Hb_001829_040 Hb_011671_480 Hb_011671_480 Hb_001829_040--Hb_011671_480 Hb_000022_050 Hb_000022_050 Hb_001829_040--Hb_000022_050 Hb_002983_080 Hb_002983_080 Hb_001829_040--Hb_002983_080 Hb_000260_720 Hb_000260_720 Hb_001829_040--Hb_000260_720 Hb_005686_120 Hb_005686_120 Hb_001829_040--Hb_005686_120 Hb_000261_230 Hb_000261_230 Hb_001829_040--Hb_000261_230 Hb_000538_240 Hb_000538_240 Hb_011671_480--Hb_000538_240 Hb_001911_040 Hb_001911_040 Hb_011671_480--Hb_001911_040 Hb_011671_480--Hb_000260_720 Hb_011671_480--Hb_002983_080 Hb_000331_090 Hb_000331_090 Hb_011671_480--Hb_000331_090 Hb_000022_050--Hb_000261_230 Hb_005797_010 Hb_005797_010 Hb_000022_050--Hb_005797_010 Hb_000009_400 Hb_000009_400 Hb_000022_050--Hb_000009_400 Hb_012322_020 Hb_012322_020 Hb_000022_050--Hb_012322_020 Hb_003929_170 Hb_003929_170 Hb_000022_050--Hb_003929_170 Hb_001405_210 Hb_001405_210 Hb_002983_080--Hb_001405_210 Hb_122548_010 Hb_122548_010 Hb_002983_080--Hb_122548_010 Hb_015026_130 Hb_015026_130 Hb_002983_080--Hb_015026_130 Hb_004102_170 Hb_004102_170 Hb_002983_080--Hb_004102_170 Hb_005381_020 Hb_005381_020 Hb_002983_080--Hb_005381_020 Hb_000046_570 Hb_000046_570 Hb_002983_080--Hb_000046_570 Hb_003342_020 Hb_003342_020 Hb_000260_720--Hb_003342_020 Hb_005535_080 Hb_005535_080 Hb_000260_720--Hb_005535_080 Hb_004055_120 Hb_004055_120 Hb_000260_720--Hb_004055_120 Hb_000107_230 Hb_000107_230 Hb_000260_720--Hb_000107_230 Hb_005686_120--Hb_011671_480 Hb_085972_010 Hb_085972_010 Hb_005686_120--Hb_085972_010 Hb_130613_010 Hb_130613_010 Hb_005686_120--Hb_130613_010 Hb_005686_120--Hb_000260_720 Hb_005686_120--Hb_002983_080 Hb_003897_040 Hb_003897_040 Hb_000261_230--Hb_003897_040 Hb_032990_010 Hb_032990_010 Hb_000261_230--Hb_032990_010 Hb_005460_050 Hb_005460_050 Hb_000261_230--Hb_005460_050 Hb_000261_230--Hb_005797_010 Hb_002739_020 Hb_002739_020 Hb_000261_230--Hb_002739_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.5345 48.1721 59.9685 121.3 35.0733 74.6749
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
40.2599 50.2022 16.1691 30.9855 27.7535

CAGE analysis