Hb_005686_120

Information

Type -
Description -
Location Contig5686: 88805-89161
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49209: 88919-89223 , PASA_asmbl_49210: 89318-92876
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005686_120 0.0 - - -
2 Hb_001829_040 0.116376186 - - PREDICTED: protein transport protein SEC13 homolog B [Jatropha curcas]
3 Hb_011671_480 0.1227462106 - - conserved hypothetical protein [Ricinus communis]
4 Hb_085972_010 0.1327149868 transcription factor TF Family: NAC NAC transcription factor 066 [Jatropha curcas]
5 Hb_130613_010 0.1462664111 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
6 Hb_000260_720 0.1473678928 - - PREDICTED: ADP-ribosylation factor-like, partial [Nicotiana tomentosiformis]
7 Hb_002983_080 0.1480102266 - - acetylornithine aminotransferase, partial [Prunus persica]
8 Hb_004055_050 0.1488612951 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
9 Hb_014819_010 0.1490454362 - - conserved hypothetical protein [Ricinus communis]
10 Hb_090158_010 0.1516840791 - - hypothetical protein RCOM_1968400 [Ricinus communis]
11 Hb_001911_040 0.1545012583 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
12 Hb_000029_090 0.1551374777 - - Nicalin precursor, putative [Ricinus communis]
13 Hb_133724_010 0.1556856537 - - conserved hypothetical protein [Ricinus communis]
14 Hb_181441_010 0.1590484503 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
15 Hb_146675_010 0.1613067257 - - PREDICTED: peroxisomal nicotinamide adenine dinucleotide carrier-like isoform X2 [Malus domestica]
16 Hb_000116_150 0.161530214 - - serine/threonine-protein kinase cx32, putative [Ricinus communis]
17 Hb_009247_010 0.1620476753 - - PREDICTED: sulfhydryl oxidase 2 isoform X1 [Jatropha curcas]
18 Hb_007390_020 0.1626333833 - - PREDICTED: protein FMP32, mitochondrial-like [Populus euphratica]
19 Hb_006643_020 0.1652012768 - - PREDICTED: uncharacterized protein LOC105628407 [Jatropha curcas]
20 Hb_000008_190 0.1653095128 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_005686_120 Hb_005686_120 Hb_001829_040 Hb_001829_040 Hb_005686_120--Hb_001829_040 Hb_011671_480 Hb_011671_480 Hb_005686_120--Hb_011671_480 Hb_085972_010 Hb_085972_010 Hb_005686_120--Hb_085972_010 Hb_130613_010 Hb_130613_010 Hb_005686_120--Hb_130613_010 Hb_000260_720 Hb_000260_720 Hb_005686_120--Hb_000260_720 Hb_002983_080 Hb_002983_080 Hb_005686_120--Hb_002983_080 Hb_001829_040--Hb_011671_480 Hb_000022_050 Hb_000022_050 Hb_001829_040--Hb_000022_050 Hb_001829_040--Hb_002983_080 Hb_001829_040--Hb_000260_720 Hb_000261_230 Hb_000261_230 Hb_001829_040--Hb_000261_230 Hb_000538_240 Hb_000538_240 Hb_011671_480--Hb_000538_240 Hb_001911_040 Hb_001911_040 Hb_011671_480--Hb_001911_040 Hb_011671_480--Hb_000260_720 Hb_011671_480--Hb_002983_080 Hb_000331_090 Hb_000331_090 Hb_011671_480--Hb_000331_090 Hb_006643_020 Hb_006643_020 Hb_085972_010--Hb_006643_020 Hb_085972_010--Hb_001911_040 Hb_085972_010--Hb_001829_040 Hb_085972_010--Hb_000022_050 Hb_001396_110 Hb_001396_110 Hb_085972_010--Hb_001396_110 Hb_000111_030 Hb_000111_030 Hb_130613_010--Hb_000111_030 Hb_133724_010 Hb_133724_010 Hb_130613_010--Hb_133724_010 Hb_130613_010--Hb_011671_480 Hb_000363_330 Hb_000363_330 Hb_130613_010--Hb_000363_330 Hb_130613_010--Hb_001911_040 Hb_003342_020 Hb_003342_020 Hb_000260_720--Hb_003342_020 Hb_005535_080 Hb_005535_080 Hb_000260_720--Hb_005535_080 Hb_004055_120 Hb_004055_120 Hb_000260_720--Hb_004055_120 Hb_000107_230 Hb_000107_230 Hb_000260_720--Hb_000107_230 Hb_001405_210 Hb_001405_210 Hb_002983_080--Hb_001405_210 Hb_122548_010 Hb_122548_010 Hb_002983_080--Hb_122548_010 Hb_015026_130 Hb_015026_130 Hb_002983_080--Hb_015026_130 Hb_004102_170 Hb_004102_170 Hb_002983_080--Hb_004102_170 Hb_005381_020 Hb_005381_020 Hb_002983_080--Hb_005381_020 Hb_000046_570 Hb_000046_570 Hb_002983_080--Hb_000046_570
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.584885 2.12746 2.23081 4.29578 0.608976 2.69751
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.19134 1.63946 0.34878 1.48514 0.760991

CAGE analysis