Hb_005535_080

Information

Type -
Description -
Location Contig5535: 52460-62291
Sequence    

Annotation

kegg
ID cic:CICLE_v10012766mg
description hypothetical protein
nr
ID XP_006429195.1
description hypothetical protein CICLE_v10012766mg [Citrus clementina]
swissprot
ID Q9LZM7
description PRA1 family protein A1 OS=Arabidopsis thaliana GN=PRA1A1 PE=2 SV=1
trembl
ID V4STW1
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10012766mg PE=4 SV=1
Gene Ontology
ID GO:0005737
description pra1 family protein a1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48354: 52473-62407
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005535_080 0.0 - - hypothetical protein CICLE_v10012766mg [Citrus clementina]
2 Hb_003209_130 0.0724239382 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
3 Hb_005381_020 0.0892690584 - - PREDICTED: uncharacterized protein LOC105630417 [Jatropha curcas]
4 Hb_002486_050 0.0925929336 - - Multiple inositol polyphosphate phosphatase 1 precursor, putative [Ricinus communis]
5 Hb_000395_040 0.0948534256 - - PREDICTED: uncharacterized protein LOC105645576 [Jatropha curcas]
6 Hb_000622_110 0.0954669182 - - cmp-sialic acid transporter, putative [Ricinus communis]
7 Hb_007919_110 0.0976410968 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
8 Hb_001677_200 0.0978145586 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000152_600 0.0988407537 - - PREDICTED: protein jagunal homolog 1 [Jatropha curcas]
10 Hb_004055_050 0.0999414813 - - PREDICTED: coatomer subunit zeta-1-like [Jatropha curcas]
11 Hb_003929_170 0.1017990962 - - PREDICTED: novel plant SNARE 13 [Jatropha curcas]
12 Hb_005977_100 0.1039859035 - - PREDICTED: tetraspanin-18 [Jatropha curcas]
13 Hb_007286_020 0.1040802033 - - hypothetical protein L484_010675 [Morus notabilis]
14 Hb_086639_080 0.1044574499 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000665_170 0.1055804916 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
16 Hb_000072_300 0.1058422562 - - PREDICTED: probable galacturonosyltransferase 9 [Jatropha curcas]
17 Hb_011310_110 0.1060091847 - - PREDICTED: probable sugar phosphate/phosphate translocator At5g25400 isoform X1 [Jatropha curcas]
18 Hb_002740_080 0.1062129439 - - flap endonuclease-1, putative [Ricinus communis]
19 Hb_002983_080 0.1062769259 - - acetylornithine aminotransferase, partial [Prunus persica]
20 Hb_004126_040 0.1066775805 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_005535_080 Hb_005535_080 Hb_003209_130 Hb_003209_130 Hb_005535_080--Hb_003209_130 Hb_005381_020 Hb_005381_020 Hb_005535_080--Hb_005381_020 Hb_002486_050 Hb_002486_050 Hb_005535_080--Hb_002486_050 Hb_000395_040 Hb_000395_040 Hb_005535_080--Hb_000395_040 Hb_000622_110 Hb_000622_110 Hb_005535_080--Hb_000622_110 Hb_007919_110 Hb_007919_110 Hb_005535_080--Hb_007919_110 Hb_003209_130--Hb_002486_050 Hb_000256_230 Hb_000256_230 Hb_003209_130--Hb_000256_230 Hb_000665_170 Hb_000665_170 Hb_003209_130--Hb_000665_170 Hb_003209_130--Hb_000622_110 Hb_004126_040 Hb_004126_040 Hb_003209_130--Hb_004126_040 Hb_000046_570 Hb_000046_570 Hb_005381_020--Hb_000046_570 Hb_007062_040 Hb_007062_040 Hb_005381_020--Hb_007062_040 Hb_000390_250 Hb_000390_250 Hb_005381_020--Hb_000390_250 Hb_000635_040 Hb_000635_040 Hb_005381_020--Hb_000635_040 Hb_001366_090 Hb_001366_090 Hb_005381_020--Hb_001366_090 Hb_002311_380 Hb_002311_380 Hb_005381_020--Hb_002311_380 Hb_002486_050--Hb_000256_230 Hb_005062_110 Hb_005062_110 Hb_002486_050--Hb_005062_110 Hb_002486_050--Hb_000622_110 Hb_002486_050--Hb_000665_170 Hb_000085_260 Hb_000085_260 Hb_002486_050--Hb_000085_260 Hb_001691_040 Hb_001691_040 Hb_000395_040--Hb_001691_040 Hb_000815_240 Hb_000815_240 Hb_000395_040--Hb_000815_240 Hb_000395_040--Hb_005381_020 Hb_000523_030 Hb_000523_030 Hb_000395_040--Hb_000523_030 Hb_000890_030 Hb_000890_030 Hb_000395_040--Hb_000890_030 Hb_000622_110--Hb_000256_230 Hb_000622_110--Hb_005062_110 Hb_000926_340 Hb_000926_340 Hb_000622_110--Hb_000926_340 Hb_086639_080 Hb_086639_080 Hb_000622_110--Hb_086639_080 Hb_003449_100 Hb_003449_100 Hb_007919_110--Hb_003449_100 Hb_000753_160 Hb_000753_160 Hb_007919_110--Hb_000753_160 Hb_002272_240 Hb_002272_240 Hb_007919_110--Hb_002272_240 Hb_012760_030 Hb_012760_030 Hb_007919_110--Hb_012760_030 Hb_007919_110--Hb_003209_130 Hb_006120_050 Hb_006120_050 Hb_007919_110--Hb_006120_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.609 13.9685 20.6751 37.8488 9.18058 10.7722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.25668 11.6315 7.83445 10.8369 11.3259

CAGE analysis