Hb_007919_110

Information

Type -
Description -
Location Contig7919: 129620-132346
Sequence    

Annotation

kegg
ID pop:POPTR_0005s28160g
description POPTRDRAFT_831732; transporter-related family protein
nr
ID XP_012073518.1
description PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
swissprot
ID Q9SRE4
description UDP-galactose transporter 2 OS=Arabidopsis thaliana GN=UDP-GALT2 PE=2 SV=1
trembl
ID A0A067KKH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07997 PE=4 SV=1
Gene Ontology
ID GO:0016021
description udp-galactose transporter 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58385: 129657-132207
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007919_110 0.0 - - PREDICTED: UDP-galactose transporter 2-like [Jatropha curcas]
2 Hb_003449_100 0.0684251104 - - PREDICTED: protein YIPF6 homolog [Jatropha curcas]
3 Hb_000753_160 0.0722925822 - - PREDICTED: uncharacterized protein LOC105640669 [Jatropha curcas]
4 Hb_002272_240 0.074790795 - - catalytic, putative [Ricinus communis]
5 Hb_012760_030 0.0798504056 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
6 Hb_003209_130 0.0805375194 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Jatropha curcas]
7 Hb_006120_050 0.0821044071 - - PREDICTED: importin subunit alpha-4-like [Jatropha curcas]
8 Hb_000703_160 0.0831564562 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
9 Hb_074399_010 0.0853980046 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
10 Hb_002304_050 0.0869361975 - - pyruvate kinase, putative [Ricinus communis]
11 Hb_002615_070 0.0872532758 - - PREDICTED: uncharacterized protein LOC105628992 isoform X1 [Jatropha curcas]
12 Hb_000805_210 0.0911100908 - - PREDICTED: oxysterol-binding protein-related protein 3C-like [Jatropha curcas]
13 Hb_000258_420 0.0920640073 - - sucrose transporter 2A [Hevea brasiliensis]
14 Hb_000258_220 0.093049173 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
15 Hb_000260_490 0.0931038655 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
16 Hb_001250_050 0.0939165116 - - PREDICTED: uncharacterized protein LOC105644623 isoform X1 [Jatropha curcas]
17 Hb_003540_050 0.0942148844 - - PREDICTED: plant intracellular Ras-group-related LRR protein 6 isoform X4 [Jatropha curcas]
18 Hb_013726_050 0.0963895235 - - PREDICTED: probable methyltransferase PMT13 [Jatropha curcas]
19 Hb_003964_080 0.0971608696 - - PREDICTED: probable methyltransferase PMT5 [Jatropha curcas]
20 Hb_002249_020 0.0971832455 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]

Gene co-expression network

sample Hb_007919_110 Hb_007919_110 Hb_003449_100 Hb_003449_100 Hb_007919_110--Hb_003449_100 Hb_000753_160 Hb_000753_160 Hb_007919_110--Hb_000753_160 Hb_002272_240 Hb_002272_240 Hb_007919_110--Hb_002272_240 Hb_012760_030 Hb_012760_030 Hb_007919_110--Hb_012760_030 Hb_003209_130 Hb_003209_130 Hb_007919_110--Hb_003209_130 Hb_006120_050 Hb_006120_050 Hb_007919_110--Hb_006120_050 Hb_000703_160 Hb_000703_160 Hb_003449_100--Hb_000703_160 Hb_002249_020 Hb_002249_020 Hb_003449_100--Hb_002249_020 Hb_002304_050 Hb_002304_050 Hb_003449_100--Hb_002304_050 Hb_003449_100--Hb_000753_160 Hb_000958_080 Hb_000958_080 Hb_003449_100--Hb_000958_080 Hb_000753_160--Hb_002304_050 Hb_001250_050 Hb_001250_050 Hb_000753_160--Hb_001250_050 Hb_002687_180 Hb_002687_180 Hb_000753_160--Hb_002687_180 Hb_001279_190 Hb_001279_190 Hb_000753_160--Hb_001279_190 Hb_013726_050 Hb_013726_050 Hb_002272_240--Hb_013726_050 Hb_001691_040 Hb_001691_040 Hb_002272_240--Hb_001691_040 Hb_002272_240--Hb_006120_050 Hb_002272_240--Hb_002304_050 Hb_001754_020 Hb_001754_020 Hb_002272_240--Hb_001754_020 Hb_000784_080 Hb_000784_080 Hb_012760_030--Hb_000784_080 Hb_001623_110 Hb_001623_110 Hb_012760_030--Hb_001623_110 Hb_000890_030 Hb_000890_030 Hb_012760_030--Hb_000890_030 Hb_000671_030 Hb_000671_030 Hb_012760_030--Hb_000671_030 Hb_004724_390 Hb_004724_390 Hb_012760_030--Hb_004724_390 Hb_002486_050 Hb_002486_050 Hb_003209_130--Hb_002486_050 Hb_000256_230 Hb_000256_230 Hb_003209_130--Hb_000256_230 Hb_000665_170 Hb_000665_170 Hb_003209_130--Hb_000665_170 Hb_005535_080 Hb_005535_080 Hb_003209_130--Hb_005535_080 Hb_000622_110 Hb_000622_110 Hb_003209_130--Hb_000622_110 Hb_004126_040 Hb_004126_040 Hb_003209_130--Hb_004126_040 Hb_011310_110 Hb_011310_110 Hb_006120_050--Hb_011310_110 Hb_030982_010 Hb_030982_010 Hb_006120_050--Hb_030982_010 Hb_010672_020 Hb_010672_020 Hb_006120_050--Hb_010672_020 Hb_006120_050--Hb_002687_180 Hb_121089_030 Hb_121089_030 Hb_006120_050--Hb_121089_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.49108 15.5028 26.2429 30.7823 8.79769 7.61922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.56963 6.17069 7.0067 8.61784 13.081

CAGE analysis