Hb_000784_080

Information

Type -
Description -
Location Contig784: 119256-125997
Sequence    

Annotation

kegg
ID rcu:RCOM_0261790
description protein disulfide isomerase, putative (EC:5.3.4.1)
nr
ID XP_002533878.1
description protein disulfide isomerase, putative [Ricinus communis]
swissprot
ID Q94F09
description Protein disulfide-isomerase 5-2 OS=Arabidopsis thaliana GN=PDIL5-2 PE=1 SV=1
trembl
ID B9T6K9
description Protein disulfide isomerase, putative OS=Ricinus communis GN=RCOM_0261790 PE=4 SV=1
Gene Ontology
ID GO:0005623
description thioredoxin family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58044: 119255-125930 , PASA_asmbl_58045: 119380-125977 , PASA_asmbl_58046: 123783-124154
cDNA
(Sanger)
(ID:Location)		 013_O02.ab1: 119380-121006 , 042_P23.ab1: 119255-121207

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000784_080 0.0 - - protein disulfide isomerase, putative [Ricinus communis]
2 Hb_012760_030 0.0677121518 - - PREDICTED: probable prolyl 4-hydroxylase 10 [Gossypium raimondii]
3 Hb_000300_550 0.0810174002 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
4 Hb_000994_020 0.0851217635 - - methylenetetrahydrofolate dehydrogenase, putative [Ricinus communis]
5 Hb_001623_110 0.0893417073 - - PREDICTED: xylosyltransferase 1 [Jatropha curcas]
6 Hb_027654_020 0.0894653379 - - PREDICTED: LIMR family protein At5g01460 [Jatropha curcas]
7 Hb_004724_390 0.0895760559 - - PREDICTED: nicalin-1-like [Populus euphratica]
8 Hb_000205_280 0.0905121 - - PREDICTED: inositol phosphorylceramide glucuronosyltransferase 1 [Jatropha curcas]
9 Hb_005322_050 0.0922926871 - - hypothetical protein POPTR_0009s02400g [Populus trichocarpa]
10 Hb_005730_010 0.0962181242 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
11 Hb_152910_010 0.097851495 - - PREDICTED: uncharacterized protein LOC105632212 [Jatropha curcas]
12 Hb_000046_600 0.0980649438 - - PREDICTED: cullin-1-like [Jatropha curcas]
13 Hb_000297_030 0.0983298235 - - PREDICTED: mitogen-activated protein kinase kinase 2 isoform X1 [Jatropha curcas]
14 Hb_000497_190 0.0995935059 - - sterol isomerase, putative [Ricinus communis]
15 Hb_000958_080 0.1001519848 - - conserved hypothetical protein [Ricinus communis]
16 Hb_015026_100 0.1004356464 - - PREDICTED: transmembrane protein 184C-like [Jatropha curcas]
17 Hb_005833_030 0.1023671577 - - PREDICTED: uncharacterized membrane protein At1g16860 [Jatropha curcas]
18 Hb_000890_030 0.1027463723 - - plastid CUL1 [Hevea brasiliensis]
19 Hb_005403_010 0.1042496574 - - PREDICTED: exocyst complex component EXO70B1-like [Jatropha curcas]
20 Hb_000302_170 0.1047287427 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000784_080 Hb_000784_080 Hb_012760_030 Hb_012760_030 Hb_000784_080--Hb_012760_030 Hb_000300_550 Hb_000300_550 Hb_000784_080--Hb_000300_550 Hb_000994_020 Hb_000994_020 Hb_000784_080--Hb_000994_020 Hb_001623_110 Hb_001623_110 Hb_000784_080--Hb_001623_110 Hb_027654_020 Hb_027654_020 Hb_000784_080--Hb_027654_020 Hb_004724_390 Hb_004724_390 Hb_000784_080--Hb_004724_390 Hb_012760_030--Hb_001623_110 Hb_000890_030 Hb_000890_030 Hb_012760_030--Hb_000890_030 Hb_000671_030 Hb_000671_030 Hb_012760_030--Hb_000671_030 Hb_007919_110 Hb_007919_110 Hb_012760_030--Hb_007919_110 Hb_012760_030--Hb_004724_390 Hb_005322_050 Hb_005322_050 Hb_000300_550--Hb_005322_050 Hb_006022_010 Hb_006022_010 Hb_000300_550--Hb_006022_010 Hb_000300_550--Hb_027654_020 Hb_172257_010 Hb_172257_010 Hb_000300_550--Hb_172257_010 Hb_000302_170 Hb_000302_170 Hb_000300_550--Hb_000302_170 Hb_000640_190 Hb_000640_190 Hb_000300_550--Hb_000640_190 Hb_015026_100 Hb_015026_100 Hb_000994_020--Hb_015026_100 Hb_000046_600 Hb_000046_600 Hb_000994_020--Hb_000046_600 Hb_000260_770 Hb_000260_770 Hb_000994_020--Hb_000260_770 Hb_006501_010 Hb_006501_010 Hb_000994_020--Hb_006501_010 Hb_000994_020--Hb_000302_170 Hb_000994_020--Hb_000300_550 Hb_001623_110--Hb_000300_550 Hb_000580_030 Hb_000580_030 Hb_001623_110--Hb_000580_030 Hb_001623_110--Hb_006022_010 Hb_007800_020 Hb_007800_020 Hb_001623_110--Hb_007800_020 Hb_000805_210 Hb_000805_210 Hb_001623_110--Hb_000805_210 Hb_000120_910 Hb_000120_910 Hb_027654_020--Hb_000120_910 Hb_005723_020 Hb_005723_020 Hb_027654_020--Hb_005723_020 Hb_000529_060 Hb_000529_060 Hb_027654_020--Hb_000529_060 Hb_103747_020 Hb_103747_020 Hb_027654_020--Hb_103747_020 Hb_027654_020--Hb_000046_600 Hb_002045_170 Hb_002045_170 Hb_004724_390--Hb_002045_170 Hb_002687_180 Hb_002687_180 Hb_004724_390--Hb_002687_180 Hb_000497_190 Hb_000497_190 Hb_004724_390--Hb_000497_190 Hb_000317_110 Hb_000317_110 Hb_004724_390--Hb_000317_110 Hb_004228_120 Hb_004228_120 Hb_004724_390--Hb_004228_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.2119 38.2192 46.9502 45.4127 31.5332 14.6964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.7944 8.90971 12.4305 28.4959 19.1059

CAGE analysis