Hb_000497_190

Information

Type -
Description -
Location Contig497: 172433-174362
Sequence    

Annotation

kegg
ID rcu:RCOM_1438730
description sterol isomerase, putative (EC:5.3.3.5)
nr
ID XP_002512695.1
description sterol isomerase, putative [Ricinus communis]
swissprot
ID Q9FTZ2
description Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Oryza sativa subsp. japonica GN=Os01g0103600 PE=2 SV=1
trembl
ID B9RG26
description Sterol isomerase, putative OS=Ricinus communis GN=RCOM_1438730 PE=4 SV=1
Gene Ontology
ID GO:0005622
description probable 3-beta-hydroxysteroid-delta -isomerase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_45527: 172462-174333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000497_190 0.0 - - sterol isomerase, putative [Ricinus communis]
2 Hb_004724_390 0.0800017968 - - PREDICTED: nicalin-1-like [Populus euphratica]
3 Hb_161568_010 0.0892875745 - - hydrolase, hydrolyzing O-glycosyl compounds, putative [Ricinus communis]
4 Hb_000261_210 0.0924929964 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
5 Hb_000154_050 0.0928356314 - - CMP-sialic acid transporter, putative [Ricinus communis]
6 Hb_001450_020 0.0933177325 - - PREDICTED: pyruvate kinase isozyme A, chloroplastic-like [Jatropha curcas]
7 Hb_005730_010 0.0983825119 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 7 isoform X1 [Populus euphratica]
8 Hb_025668_010 0.0995333103 - - unnamed protein product [Coffea canephora]
9 Hb_000784_080 0.0995935059 - - protein disulfide isomerase, putative [Ricinus communis]
10 Hb_029584_120 0.1004075226 - - PREDICTED: K(+) efflux antiporter 4 isoform X1 [Jatropha curcas]
11 Hb_000836_300 0.1017641752 - - caax prenyl protease ste24, putative [Ricinus communis]
12 Hb_000703_160 0.1020939482 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X2 [Jatropha curcas]
13 Hb_000054_040 0.10325845 - - PREDICTED: mannosyl-oligosaccharide 1,2-alpha-mannosidase MNS1 [Jatropha curcas]
14 Hb_000940_050 0.1041433345 - - hypothetical protein JCGZ_19588 [Jatropha curcas]
15 Hb_000958_080 0.1041783438 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004013_030 0.1044930158 - - Phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase and dual-specificity protein phosphatase PTEN, putative [Ricinus communis]
17 Hb_002045_170 0.1047456372 - - interferon-induced guanylate-binding protein, putative [Ricinus communis]
18 Hb_074399_010 0.1053070142 - - PREDICTED: phragmoplast orienting kinesin-1 isoform X1 [Populus euphratica]
19 Hb_004228_120 0.1063947667 - - hypothetical protein POPTR_0013s02080g [Populus trichocarpa]
20 Hb_016347_020 0.1070561245 - - PREDICTED: D-amino-acid transaminase, chloroplastic-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_000497_190 Hb_000497_190 Hb_004724_390 Hb_004724_390 Hb_000497_190--Hb_004724_390 Hb_161568_010 Hb_161568_010 Hb_000497_190--Hb_161568_010 Hb_000261_210 Hb_000261_210 Hb_000497_190--Hb_000261_210 Hb_000154_050 Hb_000154_050 Hb_000497_190--Hb_000154_050 Hb_001450_020 Hb_001450_020 Hb_000497_190--Hb_001450_020 Hb_005730_010 Hb_005730_010 Hb_000497_190--Hb_005730_010 Hb_002045_170 Hb_002045_170 Hb_004724_390--Hb_002045_170 Hb_002687_180 Hb_002687_180 Hb_004724_390--Hb_002687_180 Hb_000317_110 Hb_000317_110 Hb_004724_390--Hb_000317_110 Hb_004228_120 Hb_004228_120 Hb_004724_390--Hb_004228_120 Hb_012760_030 Hb_012760_030 Hb_004724_390--Hb_012760_030 Hb_004096_160 Hb_004096_160 Hb_161568_010--Hb_004096_160 Hb_161568_010--Hb_004228_120 Hb_005649_100 Hb_005649_100 Hb_161568_010--Hb_005649_100 Hb_000958_080 Hb_000958_080 Hb_161568_010--Hb_000958_080 Hb_000703_160 Hb_000703_160 Hb_161568_010--Hb_000703_160 Hb_002473_050 Hb_002473_050 Hb_000261_210--Hb_002473_050 Hb_000054_040 Hb_000054_040 Hb_000261_210--Hb_000054_040 Hb_001002_060 Hb_001002_060 Hb_000261_210--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_000261_210--Hb_025668_010 Hb_002351_030 Hb_002351_030 Hb_000261_210--Hb_002351_030 Hb_000371_090 Hb_000371_090 Hb_000261_210--Hb_000371_090 Hb_005064_010 Hb_005064_010 Hb_000154_050--Hb_005064_010 Hb_006588_160 Hb_006588_160 Hb_000154_050--Hb_006588_160 Hb_004013_030 Hb_004013_030 Hb_000154_050--Hb_004013_030 Hb_002837_040 Hb_002837_040 Hb_000154_050--Hb_002837_040 Hb_002871_140 Hb_002871_140 Hb_000154_050--Hb_002871_140 Hb_000154_050--Hb_000261_210 Hb_001450_020--Hb_004013_030 Hb_001450_020--Hb_006588_160 Hb_001450_020--Hb_000154_050 Hb_004032_370 Hb_004032_370 Hb_001450_020--Hb_004032_370 Hb_001279_090 Hb_001279_090 Hb_001450_020--Hb_001279_090 Hb_023313_040 Hb_023313_040 Hb_005730_010--Hb_023313_040 Hb_005730_010--Hb_025668_010 Hb_005730_010--Hb_000958_080 Hb_005730_010--Hb_004096_160 Hb_000702_090 Hb_000702_090 Hb_005730_010--Hb_000702_090 Hb_007413_040 Hb_007413_040 Hb_005730_010--Hb_007413_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.3511 12.0435 33.9841 27.2306 17.8029 8.88403
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.94843 5.67698 6.01992 16.3597 12.165

CAGE analysis