Hb_002351_030

Information

Type -
Description -
Location Contig2351: 56020-62484
Sequence    

Annotation

kegg
ID rcu:RCOM_0861180
description catalytic, putative (EC:2.4.1.224)
nr
ID XP_002522880.1
description catalytic, putative [Ricinus communis]
swissprot
ID Q9FFN2
description Probable glycosyltransferase At5g03795 OS=Arabidopsis thaliana GN=At5g03795 PE=3 SV=2
trembl
ID B9SA61
description Catalytic, putative OS=Ricinus communis GN=RCOM_0861180 PE=4 SV=1
Gene Ontology
ID GO:0005768
description probable glycosyltransferase at5g03795

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_24628: 50057-55539 , PASA_asmbl_24629: 51830-55231 , PASA_asmbl_24631: 56080-56537 , PASA_asmbl_24632: 62025-62487
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002351_030 0.0 - - catalytic, putative [Ricinus communis]
2 Hb_000261_210 0.0774945071 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
3 Hb_001002_060 0.0832242068 - - PREDICTED: putative GPI-anchor transamidase [Jatropha curcas]
4 Hb_000371_090 0.0833362908 - - PREDICTED: dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit-like [Jatropha curcas]
5 Hb_001227_130 0.0851182688 - - PREDICTED: delta(14)-sterol reductase [Jatropha curcas]
6 Hb_003119_090 0.08931781 - - PREDICTED: 14-3-3 protein 6 [Jatropha curcas]
7 Hb_001252_090 0.0905771104 - - GDP-D-mannose pyrophosphorylase [Camellia sinensis]
8 Hb_023313_040 0.0914289288 - - PREDICTED: uncharacterized protein LOC105640827 isoform X2 [Jatropha curcas]
9 Hb_011282_060 0.0924654557 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase 1 [Jatropha curcas]
10 Hb_002473_050 0.0926714765 - - catalytic, putative [Ricinus communis]
11 Hb_000787_060 0.0932180391 - - thioredoxin domain-containing protein, putative [Ricinus communis]
12 Hb_001501_080 0.0938287254 - - PREDICTED: uncharacterized protein LOC105640832 isoform X1 [Jatropha curcas]
13 Hb_001269_330 0.0962962988 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
14 Hb_000139_530 0.0989080801 - - conserved hypothetical protein [Ricinus communis]
15 Hb_159809_030 0.1003679638 - - PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 2-like isoform X2 [Jatropha curcas]
16 Hb_001087_030 0.1009770799 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit [Jatropha curcas]
17 Hb_000103_310 0.1017899586 - - PREDICTED: transmembrane emp24 domain-containing protein p24beta3 [Jatropha curcas]
18 Hb_005064_010 0.1025372459 - - PREDICTED: kelch repeat-containing protein At3g27220-like [Jatropha curcas]
19 Hb_011214_160 0.1028055939 - - PREDICTED: coatomer subunit delta [Jatropha curcas]
20 Hb_000163_090 0.1029586453 - - gamma-tubulin complex component, putative [Ricinus communis]

Gene co-expression network

sample Hb_002351_030 Hb_002351_030 Hb_000261_210 Hb_000261_210 Hb_002351_030--Hb_000261_210 Hb_001002_060 Hb_001002_060 Hb_002351_030--Hb_001002_060 Hb_000371_090 Hb_000371_090 Hb_002351_030--Hb_000371_090 Hb_001227_130 Hb_001227_130 Hb_002351_030--Hb_001227_130 Hb_003119_090 Hb_003119_090 Hb_002351_030--Hb_003119_090 Hb_001252_090 Hb_001252_090 Hb_002351_030--Hb_001252_090 Hb_002473_050 Hb_002473_050 Hb_000261_210--Hb_002473_050 Hb_000054_040 Hb_000054_040 Hb_000261_210--Hb_000054_040 Hb_000261_210--Hb_001002_060 Hb_025668_010 Hb_025668_010 Hb_000261_210--Hb_025668_010 Hb_000261_210--Hb_000371_090 Hb_023313_040 Hb_023313_040 Hb_001002_060--Hb_023313_040 Hb_000362_170 Hb_000362_170 Hb_001002_060--Hb_000362_170 Hb_000737_030 Hb_000737_030 Hb_001002_060--Hb_000737_030 Hb_001002_060--Hb_025668_010 Hb_005895_010 Hb_005895_010 Hb_001002_060--Hb_005895_010 Hb_003998_040 Hb_003998_040 Hb_000371_090--Hb_003998_040 Hb_000184_070 Hb_000184_070 Hb_000371_090--Hb_000184_070 Hb_011214_160 Hb_011214_160 Hb_000371_090--Hb_011214_160 Hb_000066_030 Hb_000066_030 Hb_000371_090--Hb_000066_030 Hb_000445_050 Hb_000445_050 Hb_001227_130--Hb_000445_050 Hb_000963_040 Hb_000963_040 Hb_001227_130--Hb_000963_040 Hb_001227_130--Hb_003119_090 Hb_000879_180 Hb_000879_180 Hb_001227_130--Hb_000879_180 Hb_011282_060 Hb_011282_060 Hb_001227_130--Hb_011282_060 Hb_007007_040 Hb_007007_040 Hb_003119_090--Hb_007007_040 Hb_003943_050 Hb_003943_050 Hb_003119_090--Hb_003943_050 Hb_003760_030 Hb_003760_030 Hb_003119_090--Hb_003760_030 Hb_003119_090--Hb_023313_040 Hb_001501_080 Hb_001501_080 Hb_003119_090--Hb_001501_080 Hb_030982_030 Hb_030982_030 Hb_003119_090--Hb_030982_030 Hb_001454_230 Hb_001454_230 Hb_001252_090--Hb_001454_230 Hb_001087_030 Hb_001087_030 Hb_001252_090--Hb_001087_030 Hb_000854_040 Hb_000854_040 Hb_001252_090--Hb_000854_040 Hb_001863_360 Hb_001863_360 Hb_001252_090--Hb_001863_360 Hb_000317_040 Hb_000317_040 Hb_001252_090--Hb_000317_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.2176 2.85684 9.37875 10.4924 6.10382 5.31828
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.04761 3.26359 4.81231 4.11604 4.42792

CAGE analysis