Hb_000854_040

Information

Type -
Description -
Location Contig854: 57388-65956
Sequence    

Annotation

kegg
ID rcu:RCOM_1760420
description glycosyltransferase, putative
nr
ID XP_012075822.1
description PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
swissprot
ID Q1LZA0
description GPI mannosyltransferase 3 OS=Bos taurus GN=PIGB PE=2 SV=1
trembl
ID A0A067KSJ5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10574 PE=4 SV=1
Gene Ontology
ID GO:0016757
description gpi mannosyltransferase 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_60524: 64344-65895
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000854_040 0.0 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
2 Hb_001252_090 0.0913533263 - - GDP-D-mannose pyrophosphorylase [Camellia sinensis]
3 Hb_003777_200 0.092556329 - - PREDICTED: uncharacterized protein LOC105640933 [Jatropha curcas]
4 Hb_000317_040 0.0965252052 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
5 Hb_001633_200 0.1127769577 - - hypothetical protein B456_005G137400 [Gossypium raimondii]
6 Hb_001454_230 0.1150792598 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
7 Hb_000748_030 0.1155919265 - - ATP binding protein, putative [Ricinus communis]
8 Hb_000197_020 0.1159991149 - - PREDICTED: protein RER1A [Jatropha curcas]
9 Hb_000705_230 0.1181924014 - - PREDICTED: serine/threonine-protein phosphatase PP1 isozyme 2 [Jatropha curcas]
10 Hb_004088_040 0.1186182757 - - PREDICTED: serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' iota isoform [Jatropha curcas]
11 Hb_000256_040 0.1200138269 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR12-like isoform X1 [Jatropha curcas]
12 Hb_000069_640 0.1207244227 - - PREDICTED: tubulin gamma-1 chain [Vitis vinifera]
13 Hb_000260_460 0.1216376504 - - Ethanolamine-phosphate cytidylyltransferase, putative [Ricinus communis]
14 Hb_000703_190 0.1223086352 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
15 Hb_019181_040 0.1247897865 - - component of oligomeric golgi complex, putative [Ricinus communis]
16 Hb_000244_170 0.129210635 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
17 Hb_004032_320 0.1295777876 - - PREDICTED: uncharacterized protein LOC105635153 [Jatropha curcas]
18 Hb_000300_600 0.1300873327 - - tubulin alpha chain, putative [Ricinus communis]
19 Hb_000352_120 0.1301304673 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105630380 [Jatropha curcas]
20 Hb_007638_020 0.1302992178 - - PREDICTED: low-temperature-induced cysteine proteinase-like [Jatropha curcas]

Gene co-expression network

sample Hb_000854_040 Hb_000854_040 Hb_001252_090 Hb_001252_090 Hb_000854_040--Hb_001252_090 Hb_003777_200 Hb_003777_200 Hb_000854_040--Hb_003777_200 Hb_000317_040 Hb_000317_040 Hb_000854_040--Hb_000317_040 Hb_001633_200 Hb_001633_200 Hb_000854_040--Hb_001633_200 Hb_001454_230 Hb_001454_230 Hb_000854_040--Hb_001454_230 Hb_000748_030 Hb_000748_030 Hb_000854_040--Hb_000748_030 Hb_001252_090--Hb_001454_230 Hb_002351_030 Hb_002351_030 Hb_001252_090--Hb_002351_030 Hb_001087_030 Hb_001087_030 Hb_001252_090--Hb_001087_030 Hb_001863_360 Hb_001863_360 Hb_001252_090--Hb_001863_360 Hb_001252_090--Hb_000317_040 Hb_003777_200--Hb_000317_040 Hb_000046_500 Hb_000046_500 Hb_003777_200--Hb_000046_500 Hb_000300_600 Hb_000300_600 Hb_003777_200--Hb_000300_600 Hb_011214_160 Hb_011214_160 Hb_003777_200--Hb_011214_160 Hb_001703_050 Hb_001703_050 Hb_003777_200--Hb_001703_050 Hb_001507_120 Hb_001507_120 Hb_003777_200--Hb_001507_120 Hb_000703_190 Hb_000703_190 Hb_000317_040--Hb_000703_190 Hb_019181_040 Hb_019181_040 Hb_000317_040--Hb_019181_040 Hb_002326_040 Hb_002326_040 Hb_000317_040--Hb_002326_040 Hb_000317_040--Hb_000046_500 Hb_012506_030 Hb_012506_030 Hb_000317_040--Hb_012506_030 Hb_001633_200--Hb_001507_120 Hb_000705_230 Hb_000705_230 Hb_001633_200--Hb_000705_230 Hb_000395_280 Hb_000395_280 Hb_001633_200--Hb_000395_280 Hb_000197_020 Hb_000197_020 Hb_001633_200--Hb_000197_020 Hb_010672_020 Hb_010672_020 Hb_001633_200--Hb_010672_020 Hb_001633_200--Hb_003777_200 Hb_012262_030 Hb_012262_030 Hb_001454_230--Hb_012262_030 Hb_001454_230--Hb_000703_190 Hb_001454_230--Hb_000046_500 Hb_001454_230--Hb_011214_160 Hb_000023_300 Hb_000023_300 Hb_001454_230--Hb_000023_300 Hb_000853_200 Hb_000853_200 Hb_000748_030--Hb_000853_200 Hb_000477_100 Hb_000477_100 Hb_000748_030--Hb_000477_100 Hb_000748_030--Hb_001454_230 Hb_004137_020 Hb_004137_020 Hb_000748_030--Hb_004137_020 Hb_003305_040 Hb_003305_040 Hb_000748_030--Hb_003305_040 Hb_003529_030 Hb_003529_030 Hb_000748_030--Hb_003529_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.75387 2.1822 5.15576 6.12073 2.11835 1.97742
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66746 1.65822 5.55983 2.17537 2.88625

CAGE analysis