Hb_003305_040

Information

Type -
Description -
Location Contig3305: 39526-58913
Sequence    

Annotation

kegg
ID pop:POPTR_0003s08940g
description AP47/50p mRNA family protein
nr
ID XP_006385641.1
description AP47/50p mRNA family protein [Populus trichocarpa]
swissprot
ID O23140
description AP-2 complex subunit mu OS=Arabidopsis thaliana GN=AP2M PE=1 SV=1
trembl
ID A9PDI1
description AP47/50p mRNA family protein OS=Populus trichocarpa GN=POPTR_0003s08940g PE=2 SV=1
Gene Ontology
ID GO:0005829
description ap-2 complex subunit mu

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34740: 39587-58783
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003305_040 0.0 - - AP47/50p mRNA family protein [Populus trichocarpa]
2 Hb_000060_050 0.0601509201 - - PREDICTED: uncharacterized protein LOC105649718 [Jatropha curcas]
3 Hb_000252_100 0.067262291 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
4 Hb_002110_100 0.070061939 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
5 Hb_000454_090 0.0761762638 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit-like [Tarenaya hassleriana]
6 Hb_000173_410 0.0789986864 - - PREDICTED: BI1-like protein [Jatropha curcas]
7 Hb_005601_040 0.0804240679 - - Histone deacetylase 1 isoform 1 [Theobroma cacao]
8 Hb_000243_350 0.0828734274 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Tarenaya hassleriana]
9 Hb_002660_170 0.0876066912 - - PREDICTED: dystrophia myotonica WD repeat-containing protein isoform X2 [Jatropha curcas]
10 Hb_001307_030 0.087873057 - - PREDICTED: succinyl-CoA ligase [ADP-forming] subunit beta, mitochondrial [Jatropha curcas]
11 Hb_002392_010 0.0890313584 - - PREDICTED: apurinic endonuclease-redox protein isoform X4 [Jatropha curcas]
12 Hb_006059_010 0.0895134202 - - PREDICTED: uncharacterized protein LOC105648671 [Jatropha curcas]
13 Hb_003529_030 0.0906745214 - - Non-imprinted in Prader-Willi/Angelman syndrome region protein, putative [Ricinus communis]
14 Hb_000025_190 0.0918298026 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
15 Hb_007386_040 0.0920099262 - - PREDICTED: acyl-coenzyme A thioesterase 9, mitochondrial-like [Jatropha curcas]
16 Hb_005701_120 0.0925634672 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
17 Hb_000748_030 0.0937200364 - - ATP binding protein, putative [Ricinus communis]
18 Hb_000402_130 0.0944824347 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
19 Hb_032920_070 0.094863877 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
20 Hb_005653_070 0.0952279079 - - K+ transport growth defect-like protein [Hevea brasiliensis]

Gene co-expression network

sample Hb_003305_040 Hb_003305_040 Hb_000060_050 Hb_000060_050 Hb_003305_040--Hb_000060_050 Hb_000252_100 Hb_000252_100 Hb_003305_040--Hb_000252_100 Hb_002110_100 Hb_002110_100 Hb_003305_040--Hb_002110_100 Hb_000454_090 Hb_000454_090 Hb_003305_040--Hb_000454_090 Hb_000173_410 Hb_000173_410 Hb_003305_040--Hb_000173_410 Hb_005601_040 Hb_005601_040 Hb_003305_040--Hb_005601_040 Hb_001489_110 Hb_001489_110 Hb_000060_050--Hb_001489_110 Hb_002660_170 Hb_002660_170 Hb_000060_050--Hb_002660_170 Hb_000212_450 Hb_000212_450 Hb_000060_050--Hb_000212_450 Hb_000060_050--Hb_000252_100 Hb_000060_050--Hb_000173_410 Hb_000252_100--Hb_000454_090 Hb_000252_100--Hb_000173_410 Hb_000140_380 Hb_000140_380 Hb_000252_100--Hb_000140_380 Hb_000505_150 Hb_000505_150 Hb_000252_100--Hb_000505_150 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_005701_120 Hb_005701_120 Hb_002110_100--Hb_005701_120 Hb_000454_090--Hb_000173_410 Hb_004078_040 Hb_004078_040 Hb_000454_090--Hb_004078_040 Hb_000220_100 Hb_000220_100 Hb_000454_090--Hb_000220_100 Hb_000393_020 Hb_000393_020 Hb_000454_090--Hb_000393_020 Hb_005765_050 Hb_005765_050 Hb_000454_090--Hb_005765_050 Hb_000173_410--Hb_000220_100 Hb_000359_060 Hb_000359_060 Hb_000173_410--Hb_000359_060 Hb_000173_410--Hb_005765_050 Hb_000173_410--Hb_004078_040 Hb_001629_030 Hb_001629_030 Hb_005601_040--Hb_001629_030 Hb_001195_400 Hb_001195_400 Hb_005601_040--Hb_001195_400 Hb_001818_100 Hb_001818_100 Hb_005601_040--Hb_001818_100 Hb_005976_080 Hb_005976_080 Hb_005601_040--Hb_005976_080 Hb_000185_220 Hb_000185_220 Hb_005601_040--Hb_000185_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.8619 8.28248 15.5728 31.8812 7.80038 9.37358
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6343 17.2476 23.9141 17.2919 19.9684

CAGE analysis