Hb_005701_120

Information

Type -
Description -
Location Contig5701: 100659-102583
Sequence    

Annotation

kegg
ID csv:101224870
description V-type proton ATPase 16 kDa proteolipid subunit-like
nr
ID XP_004152663.1
description PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
swissprot
ID P68161
description V-type proton ATPase 16 kDa proteolipid subunit OS=Mesembryanthemum crystallinum GN=VMAC1 PE=2 SV=1
trembl
ID A0A067FUW1
description Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g031129mg PE=3 SV=1
Gene Ontology
ID GO:0000220
description v-type proton atpase 16 kda proteolipid subunit

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49338: 100386-102535 , PASA_asmbl_49340: 100334-101609
cDNA
(Sanger)
(ID:Location)		 020_A13.ab1: 100595-102535

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005701_120 0.0 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
2 Hb_000402_130 0.0595931618 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
3 Hb_000800_090 0.0787946323 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
4 Hb_003988_050 0.079080621 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
5 Hb_002110_100 0.0827018937 - - PREDICTED: pyridoxine/pyridoxamine 5'-phosphate oxidase 1, chloroplastic [Jatropha curcas]
6 Hb_185830_060 0.0830049005 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
7 Hb_001957_010 0.0847823092 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g14410 isoform X1 [Jatropha curcas]
8 Hb_020390_010 0.085599745 - - PREDICTED: expansin-A13 [Jatropha curcas]
9 Hb_003998_040 0.0866552904 - - organic anion transporter, putative [Ricinus communis]
10 Hb_000197_020 0.0867339408 - - PREDICTED: protein RER1A [Jatropha curcas]
11 Hb_007894_010 0.0869355048 - - PREDICTED: uncharacterized protein LOC105632963 [Jatropha curcas]
12 Hb_000025_190 0.0898107972 - - 26S proteasome non-atpase regulatory subunit, putative [Ricinus communis]
13 Hb_004055_120 0.0918430627 - - PREDICTED: uncharacterized protein LOC105631443 [Jatropha curcas]
14 Hb_003305_040 0.0925634672 - - AP47/50p mRNA family protein [Populus trichocarpa]
15 Hb_000165_080 0.0927040559 - - PREDICTED: multiple inositol polyphosphate phosphatase 1 isoform X1 [Jatropha curcas]
16 Hb_003207_020 0.0930038638 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
17 Hb_032920_070 0.0930752904 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]
18 Hb_000390_050 0.09403492 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
19 Hb_005218_020 0.0943189379 - - Uncharacterized protein isoform 3 [Theobroma cacao]
20 Hb_000046_170 0.095373639 - - PREDICTED: uncharacterized protein LOC105631841 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_005701_120 Hb_005701_120 Hb_000402_130 Hb_000402_130 Hb_005701_120--Hb_000402_130 Hb_000800_090 Hb_000800_090 Hb_005701_120--Hb_000800_090 Hb_003988_050 Hb_003988_050 Hb_005701_120--Hb_003988_050 Hb_002110_100 Hb_002110_100 Hb_005701_120--Hb_002110_100 Hb_185830_060 Hb_185830_060 Hb_005701_120--Hb_185830_060 Hb_001957_010 Hb_001957_010 Hb_005701_120--Hb_001957_010 Hb_033152_070 Hb_033152_070 Hb_000402_130--Hb_033152_070 Hb_000402_130--Hb_002110_100 Hb_003207_020 Hb_003207_020 Hb_000402_130--Hb_003207_020 Hb_000060_050 Hb_000060_050 Hb_000402_130--Hb_000060_050 Hb_000025_190 Hb_000025_190 Hb_000402_130--Hb_000025_190 Hb_000800_090--Hb_000025_190 Hb_001946_310 Hb_001946_310 Hb_000800_090--Hb_001946_310 Hb_004046_030 Hb_004046_030 Hb_000800_090--Hb_004046_030 Hb_000185_220 Hb_000185_220 Hb_000800_090--Hb_000185_220 Hb_005648_010 Hb_005648_010 Hb_000800_090--Hb_005648_010 Hb_000115_150 Hb_000115_150 Hb_003988_050--Hb_000115_150 Hb_000165_080 Hb_000165_080 Hb_003988_050--Hb_000165_080 Hb_002902_130 Hb_002902_130 Hb_003988_050--Hb_002902_130 Hb_001633_080 Hb_001633_080 Hb_003988_050--Hb_001633_080 Hb_000258_240 Hb_000258_240 Hb_003988_050--Hb_000258_240 Hb_003988_050--Hb_000025_190 Hb_032920_070 Hb_032920_070 Hb_002110_100--Hb_032920_070 Hb_003305_040 Hb_003305_040 Hb_002110_100--Hb_003305_040 Hb_002392_010 Hb_002392_010 Hb_002110_100--Hb_002392_010 Hb_004158_020 Hb_004158_020 Hb_002110_100--Hb_004158_020 Hb_005653_070 Hb_005653_070 Hb_002110_100--Hb_005653_070 Hb_002193_060 Hb_002193_060 Hb_185830_060--Hb_002193_060 Hb_001486_040 Hb_001486_040 Hb_185830_060--Hb_001486_040 Hb_000395_110 Hb_000395_110 Hb_185830_060--Hb_000395_110 Hb_005993_010 Hb_005993_010 Hb_185830_060--Hb_005993_010 Hb_000665_180 Hb_000665_180 Hb_185830_060--Hb_000665_180 Hb_065968_010 Hb_065968_010 Hb_001957_010--Hb_065968_010 Hb_003605_020 Hb_003605_020 Hb_001957_010--Hb_003605_020 Hb_000197_190 Hb_000197_190 Hb_001957_010--Hb_000197_190 Hb_001507_120 Hb_001507_120 Hb_001957_010--Hb_001507_120 Hb_000395_280 Hb_000395_280 Hb_001957_010--Hb_000395_280 Hb_003994_030 Hb_003994_030 Hb_001957_010--Hb_003994_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.86978 15.3917 28.4156 64.4956 12.6408 16.9143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3967 22.6651 23.5912 31.2078 32.8185

CAGE analysis