Hb_033152_070

Information

Type -
Description -
Location Contig33152: 57645-65666
Sequence    

Annotation

kegg
ID rcu:RCOM_0773980
description N-acetyl-gamma-glutamyl-phosphate reductase, putative (EC:1.2.1.38)
nr
ID XP_002521834.1
description N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
swissprot
ID Q93Z70
description Probable N-acetyl-gamma-glutamyl-phosphate reductase, chloroplastic OS=Arabidopsis thaliana GN=At2g19940 PE=1 SV=2
trembl
ID B9S765
description N-acetyl-gamma-glutamyl-phosphate reductase OS=Ricinus communis GN=RCOM_0773980 PE=3 SV=1
Gene Ontology
ID GO:0005730
description probable n-acetyl-gamma-glutamyl-phosphate chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34851: 56500-57083 , PASA_asmbl_34853: 58027-65743 , PASA_asmbl_34854: 63365-63602
cDNA
(Sanger)
(ID:Location)		 048_O20.ab1: 58027-63631

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033152_070 0.0 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
2 Hb_010042_020 0.058749893 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
3 Hb_003207_020 0.061326993 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
4 Hb_000928_190 0.0725695234 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
5 Hb_004525_040 0.0822318896 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
6 Hb_003052_180 0.0858302602 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
7 Hb_000402_130 0.0863886358 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
8 Hb_001481_150 0.087867864 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
9 Hb_000107_110 0.0902482172 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_005701_120 0.0957045152 - - PREDICTED: V-type proton ATPase 16 kDa proteolipid subunit [Cucumis sativus]
11 Hb_004881_030 0.0961595127 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
12 Hb_001486_040 0.0975859206 - - PREDICTED: uncharacterized protein LOC105632624 isoform X1 [Jatropha curcas]
13 Hb_002781_030 0.1057726647 - - protein binding protein, putative [Ricinus communis]
14 Hb_019280_020 0.1080385175 - - PREDICTED: proline-rich receptor-like protein kinase PERK14 isoform X1 [Jatropha curcas]
15 Hb_000258_240 0.1087886609 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
16 Hb_148130_020 0.1094981191 - - -
17 Hb_000800_090 0.1097510169 rubber biosynthesis Gene Name: Dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex PREDICTED: dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex, mitochondrial [Jatropha curcas]
18 Hb_000671_130 0.1109735755 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
19 Hb_004607_070 0.1123085291 - - integral membrane protein, putative [Ricinus communis]
20 Hb_003988_050 0.1143843149 - - PREDICTED: zinc finger protein-like 1 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_033152_070 Hb_033152_070 Hb_010042_020 Hb_010042_020 Hb_033152_070--Hb_010042_020 Hb_003207_020 Hb_003207_020 Hb_033152_070--Hb_003207_020 Hb_000928_190 Hb_000928_190 Hb_033152_070--Hb_000928_190 Hb_004525_040 Hb_004525_040 Hb_033152_070--Hb_004525_040 Hb_003052_180 Hb_003052_180 Hb_033152_070--Hb_003052_180 Hb_000402_130 Hb_000402_130 Hb_033152_070--Hb_000402_130 Hb_010042_020--Hb_003207_020 Hb_010042_020--Hb_000928_190 Hb_001486_040 Hb_001486_040 Hb_010042_020--Hb_001486_040 Hb_010042_020--Hb_004525_040 Hb_000107_110 Hb_000107_110 Hb_010042_020--Hb_000107_110 Hb_003207_020--Hb_001486_040 Hb_003994_030 Hb_003994_030 Hb_003207_020--Hb_003994_030 Hb_003207_020--Hb_000402_130 Hb_005701_120 Hb_005701_120 Hb_003207_020--Hb_005701_120 Hb_000258_240 Hb_000258_240 Hb_000928_190--Hb_000258_240 Hb_002781_030 Hb_002781_030 Hb_000928_190--Hb_002781_030 Hb_001481_150 Hb_001481_150 Hb_000928_190--Hb_001481_150 Hb_003988_050 Hb_003988_050 Hb_000928_190--Hb_003988_050 Hb_000389_030 Hb_000389_030 Hb_004525_040--Hb_000389_030 Hb_001021_010 Hb_001021_010 Hb_004525_040--Hb_001021_010 Hb_000256_230 Hb_000256_230 Hb_004525_040--Hb_000256_230 Hb_004126_040 Hb_004126_040 Hb_004525_040--Hb_004126_040 Hb_001842_010 Hb_001842_010 Hb_003052_180--Hb_001842_010 Hb_003071_070 Hb_003071_070 Hb_003052_180--Hb_003071_070 Hb_004881_030 Hb_004881_030 Hb_003052_180--Hb_004881_030 Hb_001946_180 Hb_001946_180 Hb_003052_180--Hb_001946_180 Hb_005218_020 Hb_005218_020 Hb_003052_180--Hb_005218_020 Hb_000402_130--Hb_005701_120 Hb_002110_100 Hb_002110_100 Hb_000402_130--Hb_002110_100 Hb_000060_050 Hb_000060_050 Hb_000402_130--Hb_000060_050 Hb_000025_190 Hb_000025_190 Hb_000402_130--Hb_000025_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.80194 5.25406 5.78428 28.2435 3.40269 4.8717
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.87103 6.5739 6.50254 11.126 11.9779

CAGE analysis