Hb_003071_070

Information

Type -
Description -
Location Contig3071: 71748-80952
Sequence    

Annotation

kegg
ID pop:POPTR_0018s07380g
description POPTRDRAFT_835735; sucrose synthase family protein
nr
ID AGM14948.1
description sucrose synthase 3 [Hevea brasiliensis]
swissprot
ID P13708
description Sucrose synthase OS=Glycine max GN=SS PE=1 SV=2
trembl
ID A0A023HKA4
description Sucrose synthase 3 OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0016157
description sucrose synthase 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_32448: 74068-78478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003071_070 0.0 - - sucrose synthase 3 [Hevea brasiliensis]
2 Hb_003052_180 0.0862618661 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
3 Hb_002660_110 0.1139593676 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
4 Hb_007574_070 0.1188325755 - - fatty acid desaturase, putative [Ricinus communis]
5 Hb_002603_050 0.1225948303 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP20-1-like isoform X1 [Jatropha curcas]
6 Hb_000622_350 0.1238054456 - - PREDICTED: protein ABIL1 [Jatropha curcas]
7 Hb_001842_010 0.131799414 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_004881_030 0.1398835485 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
9 Hb_005218_020 0.141817816 - - Uncharacterized protein isoform 3 [Theobroma cacao]
10 Hb_017014_010 0.1425313051 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
11 Hb_003911_020 0.1426353671 - - PREDICTED: uncharacterized protein LOC105121332 [Populus euphratica]
12 Hb_000679_230 0.1434834089 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
13 Hb_000331_370 0.1448089073 - - Glyceraldehyde-3-phosphate dehydrogenase-2C cytosolic [Gossypium arboreum]
14 Hb_000399_060 0.1464084136 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
15 Hb_003994_300 0.1472480942 - - conserved hypothetical protein [Ricinus communis]
16 Hb_033152_070 0.1480294347 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
17 Hb_010577_010 0.1499256582 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
18 Hb_000077_290 0.150097765 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000066_030 0.1501153818 - - PREDICTED: uncharacterized protein LOC105643898 isoform X2 [Jatropha curcas]
20 Hb_001104_130 0.150175181 - - C-14 sterol reductase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003071_070 Hb_003071_070 Hb_003052_180 Hb_003052_180 Hb_003071_070--Hb_003052_180 Hb_002660_110 Hb_002660_110 Hb_003071_070--Hb_002660_110 Hb_007574_070 Hb_007574_070 Hb_003071_070--Hb_007574_070 Hb_002603_050 Hb_002603_050 Hb_003071_070--Hb_002603_050 Hb_000622_350 Hb_000622_350 Hb_003071_070--Hb_000622_350 Hb_001842_010 Hb_001842_010 Hb_003071_070--Hb_001842_010 Hb_003052_180--Hb_001842_010 Hb_033152_070 Hb_033152_070 Hb_003052_180--Hb_033152_070 Hb_004881_030 Hb_004881_030 Hb_003052_180--Hb_004881_030 Hb_001946_180 Hb_001946_180 Hb_003052_180--Hb_001946_180 Hb_005218_020 Hb_005218_020 Hb_003052_180--Hb_005218_020 Hb_002660_110--Hb_003052_180 Hb_002660_110--Hb_000622_350 Hb_122636_010 Hb_122636_010 Hb_002660_110--Hb_122636_010 Hb_000008_190 Hb_000008_190 Hb_002660_110--Hb_000008_190 Hb_001609_040 Hb_001609_040 Hb_002660_110--Hb_001609_040 Hb_010577_010 Hb_010577_010 Hb_007574_070--Hb_010577_010 Hb_010931_140 Hb_010931_140 Hb_007574_070--Hb_010931_140 Hb_091349_010 Hb_091349_010 Hb_007574_070--Hb_091349_010 Hb_007574_070--Hb_002603_050 Hb_007574_070--Hb_003052_180 Hb_002603_050--Hb_004881_030 Hb_002603_050--Hb_003052_180 Hb_001104_130 Hb_001104_130 Hb_002603_050--Hb_001104_130 Hb_009661_030 Hb_009661_030 Hb_002603_050--Hb_009661_030 Hb_000004_020 Hb_000004_020 Hb_002603_050--Hb_000004_020 Hb_000032_070 Hb_000032_070 Hb_002603_050--Hb_000032_070 Hb_000173_060 Hb_000173_060 Hb_000622_350--Hb_000173_060 Hb_004126_040 Hb_004126_040 Hb_000622_350--Hb_004126_040 Hb_000094_290 Hb_000094_290 Hb_000622_350--Hb_000094_290 Hb_000074_100 Hb_000074_100 Hb_000622_350--Hb_000074_100 Hb_000889_100 Hb_000889_100 Hb_000622_350--Hb_000889_100 Hb_001842_010--Hb_001946_180 Hb_000679_230 Hb_000679_230 Hb_001842_010--Hb_000679_230 Hb_001842_010--Hb_005218_020 Hb_002804_040 Hb_002804_040 Hb_001842_010--Hb_002804_040 Hb_000853_200 Hb_000853_200 Hb_001842_010--Hb_000853_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
49.9602 17.4841 40.9983 230.804 23.1533 67.1901
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.0129 22.2782 50.7917 53.1779 87.5948

CAGE analysis