Hb_010931_140

Information

Type -
Description -
Location Contig10931: 113243-113481
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_02835: 104121-113520
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010931_140 0.0 - - -
2 Hb_025477_070 0.1142390068 - - hypothetical protein CICLE_v10006100mg [Citrus clementina]
3 Hb_010577_010 0.1399524603 - - PREDICTED: 2-dehydro-3-deoxyphosphooctonate aldolase-like [Populus euphratica]
4 Hb_007574_070 0.1470223701 - - fatty acid desaturase, putative [Ricinus communis]
5 Hb_000369_120 0.1487121609 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 3-B [Jatropha curcas]
6 Hb_001969_020 0.1600881522 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
7 Hb_004466_060 0.1683071464 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
8 Hb_003071_070 0.1788301857 - - sucrose synthase 3 [Hevea brasiliensis]
9 Hb_017014_010 0.193278719 - - PREDICTED: syntaxin-132-like isoform X1 [Jatropha curcas]
10 Hb_002611_030 0.1944995073 - - PREDICTED: alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
11 Hb_089202_010 0.2019827004 - - PREDICTED: serine/threonine-protein phosphatase PP2A catalytic subunit-like [Nicotiana sylvestris]
12 Hb_000032_070 0.2020005316 - - hypothetical protein POPTR_0003s13760g [Populus trichocarpa]
13 Hb_048702_010 0.2027589082 - - PREDICTED: ER membrane protein complex subunit 7 homolog isoform X1 [Jatropha curcas]
14 Hb_091349_010 0.2053802406 - - hypothetical protein EUGRSUZ_C02287 [Eucalyptus grandis]
15 Hb_100137_010 0.2057518858 - - hypothetical protein JCGZ_17848 [Jatropha curcas]
16 Hb_006634_110 0.2082411159 - - BnaC04g40780D [Brassica napus]
17 Hb_002078_500 0.2088972527 - - conserved hypothetical protein [Ricinus communis]
18 Hb_122636_010 0.2094814903 - - dienelactone hydrolase family protein [Populus trichocarpa]
19 Hb_000683_100 0.2096023772 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
20 Hb_001489_130 0.2112491681 - - Pectate lyase precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_010931_140 Hb_010931_140 Hb_025477_070 Hb_025477_070 Hb_010931_140--Hb_025477_070 Hb_010577_010 Hb_010577_010 Hb_010931_140--Hb_010577_010 Hb_007574_070 Hb_007574_070 Hb_010931_140--Hb_007574_070 Hb_000369_120 Hb_000369_120 Hb_010931_140--Hb_000369_120 Hb_001969_020 Hb_001969_020 Hb_010931_140--Hb_001969_020 Hb_004466_060 Hb_004466_060 Hb_010931_140--Hb_004466_060 Hb_025477_070--Hb_000369_120 Hb_025477_070--Hb_010577_010 Hb_025477_070--Hb_001969_020 Hb_025477_070--Hb_007574_070 Hb_004117_120 Hb_004117_120 Hb_025477_070--Hb_004117_120 Hb_091349_010 Hb_091349_010 Hb_010577_010--Hb_091349_010 Hb_010577_010--Hb_001969_020 Hb_000683_100 Hb_000683_100 Hb_010577_010--Hb_000683_100 Hb_122636_010 Hb_122636_010 Hb_010577_010--Hb_122636_010 Hb_010577_010--Hb_007574_070 Hb_003071_070 Hb_003071_070 Hb_007574_070--Hb_003071_070 Hb_007574_070--Hb_091349_010 Hb_002603_050 Hb_002603_050 Hb_007574_070--Hb_002603_050 Hb_003052_180 Hb_003052_180 Hb_007574_070--Hb_003052_180 Hb_027760_020 Hb_027760_020 Hb_000369_120--Hb_027760_020 Hb_000369_120--Hb_001969_020 Hb_000223_170 Hb_000223_170 Hb_000369_120--Hb_000223_170 Hb_000240_100 Hb_000240_100 Hb_000369_120--Hb_000240_100 Hb_000369_120--Hb_010577_010 Hb_001969_020--Hb_000683_100 Hb_000016_060 Hb_000016_060 Hb_001969_020--Hb_000016_060 Hb_002960_130 Hb_002960_130 Hb_001969_020--Hb_002960_130 Hb_001163_040 Hb_001163_040 Hb_001969_020--Hb_001163_040 Hb_000053_030 Hb_000053_030 Hb_004466_060--Hb_000053_030 Hb_100137_010 Hb_100137_010 Hb_004466_060--Hb_100137_010 Hb_000168_010 Hb_000168_010 Hb_004466_060--Hb_000168_010 Hb_089202_010 Hb_089202_010 Hb_004466_060--Hb_089202_010 Hb_002611_030 Hb_002611_030 Hb_004466_060--Hb_002611_030 Hb_002562_110 Hb_002562_110 Hb_004466_060--Hb_002562_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9242 4.1393 19.7509 211.354 15.0979 89.4806
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.2706 18.4807 69.0231 18.7397 56.0831

CAGE analysis