Hb_000016_060

Information

Type -
Description -
Location Contig16: 118773-119639
Sequence    

Annotation

kegg
ID rcu:RCOM_1497850
description mads box protein, putative (EC:1.3.1.74)
nr
ID XP_002510866.1
description mads box protein, putative [Ricinus communis]
swissprot
ID O82743
description Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1
trembl
ID B9R9J1
description Mads box protein, putative OS=Ricinus communis GN=RCOM_1497850 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads-box protein soc1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14268: 118597-137863
cDNA
(Sanger)
(ID:Location)		 040_O23.ab1: 119632-137705

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000016_060 0.0 - - mads box protein, putative [Ricinus communis]
2 Hb_001969_020 0.1198903482 - - hypothetical protein POPTR_0010s04700g [Populus trichocarpa]
3 Hb_000023_290 0.1236731434 - - steroid binding protein, putative [Ricinus communis]
4 Hb_148130_020 0.12856045 - - -
5 Hb_006153_030 0.1326803301 - - PREDICTED: probable transaldolase [Jatropha curcas]
6 Hb_002562_110 0.1338170467 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
7 Hb_002960_130 0.1367608685 - - hypothetical protein B456_008G036100 [Gossypium raimondii]
8 Hb_001208_040 0.1377046926 - - hypothetical protein CISIN_1g025613mg [Citrus sinensis]
9 Hb_000004_010 0.137805508 - - hypothetical protein Csa_6G120400 [Cucumis sativus]
10 Hb_000125_020 0.1425422666 transcription factor TF Family: mTERF -
11 Hb_001747_030 0.1437611915 - - hypothetical protein F383_08210 [Gossypium arboreum]
12 Hb_000603_070 0.1448084118 - - -
13 Hb_004669_030 0.1465073272 - - -
14 Hb_005694_020 0.1489378664 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
15 Hb_002073_010 0.1509094909 - - -
16 Hb_000683_100 0.1524044778 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
17 Hb_000635_070 0.1525556617 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
18 Hb_007943_200 0.1566319547 - - Uncharacterized protein isoform 2 [Theobroma cacao]
19 Hb_175933_010 0.1575620831 - - NADH-ubiquinone oxidoreductase 24 kD subunit, putative [Ricinus communis]
20 Hb_000136_100 0.1627167701 - - PREDICTED: syntaxin-61 [Jatropha curcas]

Gene co-expression network

sample Hb_000016_060 Hb_000016_060 Hb_001969_020 Hb_001969_020 Hb_000016_060--Hb_001969_020 Hb_000023_290 Hb_000023_290 Hb_000016_060--Hb_000023_290 Hb_148130_020 Hb_148130_020 Hb_000016_060--Hb_148130_020 Hb_006153_030 Hb_006153_030 Hb_000016_060--Hb_006153_030 Hb_002562_110 Hb_002562_110 Hb_000016_060--Hb_002562_110 Hb_002960_130 Hb_002960_130 Hb_000016_060--Hb_002960_130 Hb_000683_100 Hb_000683_100 Hb_001969_020--Hb_000683_100 Hb_010577_010 Hb_010577_010 Hb_001969_020--Hb_010577_010 Hb_000369_120 Hb_000369_120 Hb_001969_020--Hb_000369_120 Hb_001969_020--Hb_002960_130 Hb_001163_040 Hb_001163_040 Hb_001969_020--Hb_001163_040 Hb_002133_020 Hb_002133_020 Hb_000023_290--Hb_002133_020 Hb_004176_070 Hb_004176_070 Hb_000023_290--Hb_004176_070 Hb_000733_080 Hb_000733_080 Hb_000023_290--Hb_000733_080 Hb_000359_090 Hb_000359_090 Hb_000023_290--Hb_000359_090 Hb_001747_030 Hb_001747_030 Hb_000023_290--Hb_001747_030 Hb_002781_030 Hb_002781_030 Hb_148130_020--Hb_002781_030 Hb_010042_020 Hb_010042_020 Hb_148130_020--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_148130_020--Hb_033152_070 Hb_000928_190 Hb_000928_190 Hb_148130_020--Hb_000928_190 Hb_000258_240 Hb_000258_240 Hb_148130_020--Hb_000258_240 Hb_000008_190 Hb_000008_190 Hb_148130_020--Hb_000008_190 Hb_001799_200 Hb_001799_200 Hb_006153_030--Hb_001799_200 Hb_007943_200 Hb_007943_200 Hb_006153_030--Hb_007943_200 Hb_005694_020 Hb_005694_020 Hb_006153_030--Hb_005694_020 Hb_002735_050 Hb_002735_050 Hb_006153_030--Hb_002735_050 Hb_008642_030 Hb_008642_030 Hb_006153_030--Hb_008642_030 Hb_082006_010 Hb_082006_010 Hb_002562_110--Hb_082006_010 Hb_000635_070 Hb_000635_070 Hb_002562_110--Hb_000635_070 Hb_002078_260 Hb_002078_260 Hb_002562_110--Hb_002078_260 Hb_009270_030 Hb_009270_030 Hb_002562_110--Hb_009270_030 Hb_004669_030 Hb_004669_030 Hb_002562_110--Hb_004669_030 Hb_019181_030 Hb_019181_030 Hb_002960_130--Hb_019181_030 Hb_002960_130--Hb_001747_030 Hb_001208_040 Hb_001208_040 Hb_002960_130--Hb_001208_040 Hb_002960_130--Hb_000683_100 Hb_001584_240 Hb_001584_240 Hb_002960_130--Hb_001584_240 Hb_000217_020 Hb_000217_020 Hb_002960_130--Hb_000217_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9248 5.82045 12.6547 108.733 7.94615 35.9359
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
39.0193 37.0233 13.0205 28.8538 17.8483

CAGE analysis