Hb_006153_030

Information

Type -
Description -
Location Contig6153: 32446-40553
Sequence    

Annotation

kegg
ID cic:CICLE_v10020501mg
description hypothetical protein
nr
ID XP_012087136.1
description PREDICTED: probable transaldolase [Jatropha curcas]
swissprot
ID B0UV30
description Transaldolase OS=Histophilus somni (strain 2336) GN=tal PE=3 SV=1
trembl
ID A0A067JNS2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20787 PE=3 SV=1
Gene Ontology
ID GO:0003824
description probable transaldolase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51180: 33152-33360 , PASA_asmbl_51181: 33222-33376 , PASA_asmbl_51182: 39595-40498
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_030 0.0 - - PREDICTED: probable transaldolase [Jatropha curcas]
2 Hb_001799_200 0.1156687148 - - PREDICTED: tRNA wybutosine-synthesizing protein 4 [Jatropha curcas]
3 Hb_007943_200 0.1211053892 - - Uncharacterized protein isoform 2 [Theobroma cacao]
4 Hb_005694_020 0.1285440067 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
5 Hb_000016_060 0.1326803301 - - mads box protein, putative [Ricinus communis]
6 Hb_002735_050 0.1327546426 - - PREDICTED: thiamine-repressible mitochondrial transport protein THI74 isoform X1 [Jatropha curcas]
7 Hb_008642_030 0.139242929 - - PREDICTED: UMP-CMP kinase 3 isoform X1 [Jatropha curcas]
8 Hb_002562_110 0.1428149714 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
9 Hb_002481_060 0.1437483133 - - PREDICTED: uncharacterized protein LOC105640851 [Jatropha curcas]
10 Hb_000023_290 0.1440959546 - - steroid binding protein, putative [Ricinus communis]
11 Hb_000136_100 0.1449925369 - - PREDICTED: syntaxin-61 [Jatropha curcas]
12 Hb_004176_070 0.1488028118 - - PREDICTED: SPX and EXS domain-containing protein 1-like isoform X1 [Jatropha curcas]
13 Hb_002477_010 0.1492313077 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000735_110 0.1494464696 - - fk506-binding protein, putative [Ricinus communis]
15 Hb_009680_020 0.1502133371 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
16 Hb_158163_010 0.1506009695 - - protein binding protein, putative [Ricinus communis]
17 Hb_000392_190 0.1513832732 - - PREDICTED: NAP1-related protein 2 [Jatropha curcas]
18 Hb_001250_060 0.1521110469 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
19 Hb_000808_190 0.1561663838 - - PREDICTED: GTP-binding protein SAR1A-like [Eucalyptus grandis]
20 Hb_000641_020 0.157213172 - - PREDICTED: tubulin-folding cofactor B-like [Jatropha curcas]

Gene co-expression network

sample Hb_006153_030 Hb_006153_030 Hb_001799_200 Hb_001799_200 Hb_006153_030--Hb_001799_200 Hb_007943_200 Hb_007943_200 Hb_006153_030--Hb_007943_200 Hb_005694_020 Hb_005694_020 Hb_006153_030--Hb_005694_020 Hb_000016_060 Hb_000016_060 Hb_006153_030--Hb_000016_060 Hb_002735_050 Hb_002735_050 Hb_006153_030--Hb_002735_050 Hb_008642_030 Hb_008642_030 Hb_006153_030--Hb_008642_030 Hb_099136_010 Hb_099136_010 Hb_001799_200--Hb_099136_010 Hb_000735_110 Hb_000735_110 Hb_001799_200--Hb_000735_110 Hb_002518_210 Hb_002518_210 Hb_001799_200--Hb_002518_210 Hb_002200_040 Hb_002200_040 Hb_001799_200--Hb_002200_040 Hb_004303_040 Hb_004303_040 Hb_001799_200--Hb_004303_040 Hb_002477_010 Hb_002477_010 Hb_007943_200--Hb_002477_010 Hb_007943_200--Hb_005694_020 Hb_143629_130 Hb_143629_130 Hb_007943_200--Hb_143629_130 Hb_148130_020 Hb_148130_020 Hb_007943_200--Hb_148130_020 Hb_007943_200--Hb_002735_050 Hb_002078_260 Hb_002078_260 Hb_005694_020--Hb_002078_260 Hb_007894_230 Hb_007894_230 Hb_005694_020--Hb_007894_230 Hb_082006_010 Hb_082006_010 Hb_005694_020--Hb_082006_010 Hb_041205_010 Hb_041205_010 Hb_005694_020--Hb_041205_010 Hb_132180_010 Hb_132180_010 Hb_005694_020--Hb_132180_010 Hb_029142_070 Hb_029142_070 Hb_005694_020--Hb_029142_070 Hb_001969_020 Hb_001969_020 Hb_000016_060--Hb_001969_020 Hb_000023_290 Hb_000023_290 Hb_000016_060--Hb_000023_290 Hb_000016_060--Hb_148130_020 Hb_002562_110 Hb_002562_110 Hb_000016_060--Hb_002562_110 Hb_002960_130 Hb_002960_130 Hb_000016_060--Hb_002960_130 Hb_003697_050 Hb_003697_050 Hb_002735_050--Hb_003697_050 Hb_004935_060 Hb_004935_060 Hb_002735_050--Hb_004935_060 Hb_003141_070 Hb_003141_070 Hb_002735_050--Hb_003141_070 Hb_002289_080 Hb_002289_080 Hb_002735_050--Hb_002289_080 Hb_002284_230 Hb_002284_230 Hb_002735_050--Hb_002284_230 Hb_025098_010 Hb_025098_010 Hb_002735_050--Hb_025098_010 Hb_002154_110 Hb_002154_110 Hb_008642_030--Hb_002154_110 Hb_158163_010 Hb_158163_010 Hb_008642_030--Hb_158163_010 Hb_003103_010 Hb_003103_010 Hb_008642_030--Hb_003103_010 Hb_000563_200 Hb_000563_200 Hb_008642_030--Hb_000563_200 Hb_000016_170 Hb_000016_170 Hb_008642_030--Hb_000016_170 Hb_005167_030 Hb_005167_030 Hb_008642_030--Hb_005167_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.305048 0.119946 0.336856 2.02452 0.353366 1.02855
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.41898 1.29612 0.39966 0.939336 0.888805

CAGE analysis