Hb_002562_110

Information

Type -
Description -
Location Contig2562: 113793-116160
Sequence    

Annotation

kegg
ID cit:102626823
description CBS domain-containing protein CBSX3, mitochondrial-like
nr
ID XP_012077615.1
description PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
swissprot
ID Q9LEV3
description CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1
trembl
ID A0A067LB12
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17263 PE=4 SV=1
Gene Ontology
ID GO:0003824
description cbs domain-containing protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_26718: 113860-116300 , PASA_asmbl_26719: 113883-116304 , PASA_asmbl_26720: 113883-115389 , PASA_asmbl_26721: 114807-115389 , PASA_asmbl_26722: 115421-115694 , PASA_asmbl_26723: 113949-114115
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002562_110 0.0 - - PREDICTED: CBS domain-containing protein CBSX3, mitochondrial [Jatropha curcas]
2 Hb_082006_010 0.0897760597 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000635_070 0.1052335589 - - PREDICTED: probable signal peptidase complex subunit 1 [Jatropha curcas]
4 Hb_002078_260 0.1232334905 - - unknown [Populus trichocarpa]
5 Hb_009270_030 0.1304630949 - - Dehydration-responsive protein RD22 precursor, putative [Ricinus communis]
6 Hb_004669_030 0.1327213111 - - -
7 Hb_000016_060 0.1338170467 - - mads box protein, putative [Ricinus communis]
8 Hb_005694_020 0.1341441001 - - PREDICTED: ORM1-like protein 2 [Gossypium raimondii]
9 Hb_004466_060 0.1357016676 - - hypothetical protein POPTR_0009s12110g [Populus trichocarpa]
10 Hb_001747_030 0.1361644947 - - hypothetical protein F383_08210 [Gossypium arboreum]
11 Hb_000074_060 0.136757341 - - PREDICTED: membrane-associated progesterone-binding protein 4-like [Populus euphratica]
12 Hb_000125_020 0.1374994041 transcription factor TF Family: mTERF -
13 Hb_029142_070 0.1401389934 - - -
14 Hb_004709_020 0.1404132629 - - PREDICTED: putative threonine aspartase [Jatropha curcas]
15 Hb_006153_030 0.1428149714 - - PREDICTED: probable transaldolase [Jatropha curcas]
16 Hb_000340_520 0.1442854869 - - PREDICTED: cytochrome c oxidase subunit 5C [Jatropha curcas]
17 Hb_000125_010 0.1443376047 transcription factor TF Family: mTERF -
18 Hb_001250_060 0.1452441517 - - PREDICTED: signal recognition particle receptor subunit beta-like [Jatropha curcas]
19 Hb_000342_160 0.148230225 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
20 Hb_002168_010 0.1511602698 - - PREDICTED: bifunctional dihydrofolate reductase-thymidylate synthase-like isoform X4 [Vitis vinifera]

Gene co-expression network

sample Hb_002562_110 Hb_002562_110 Hb_082006_010 Hb_082006_010 Hb_002562_110--Hb_082006_010 Hb_000635_070 Hb_000635_070 Hb_002562_110--Hb_000635_070 Hb_002078_260 Hb_002078_260 Hb_002562_110--Hb_002078_260 Hb_009270_030 Hb_009270_030 Hb_002562_110--Hb_009270_030 Hb_004669_030 Hb_004669_030 Hb_002562_110--Hb_004669_030 Hb_000016_060 Hb_000016_060 Hb_002562_110--Hb_000016_060 Hb_082006_010--Hb_000635_070 Hb_082006_010--Hb_009270_030 Hb_082006_010--Hb_002078_260 Hb_129672_010 Hb_129672_010 Hb_082006_010--Hb_129672_010 Hb_041205_010 Hb_041205_010 Hb_082006_010--Hb_041205_010 Hb_000635_070--Hb_009270_030 Hb_016604_030 Hb_016604_030 Hb_000635_070--Hb_016604_030 Hb_000635_070--Hb_004669_030 Hb_000635_070--Hb_129672_010 Hb_007894_230 Hb_007894_230 Hb_002078_260--Hb_007894_230 Hb_030982_020 Hb_030982_020 Hb_002078_260--Hb_030982_020 Hb_005694_020 Hb_005694_020 Hb_002078_260--Hb_005694_020 Hb_132180_010 Hb_132180_010 Hb_002078_260--Hb_132180_010 Hb_000340_520 Hb_000340_520 Hb_002078_260--Hb_000340_520 Hb_009270_030--Hb_129672_010 Hb_009270_030--Hb_030982_020 Hb_011214_100 Hb_011214_100 Hb_009270_030--Hb_011214_100 Hb_000671_120 Hb_000671_120 Hb_004669_030--Hb_000671_120 Hb_001233_020 Hb_001233_020 Hb_004669_030--Hb_001233_020 Hb_004669_030--Hb_132180_010 Hb_001220_010 Hb_001220_010 Hb_004669_030--Hb_001220_010 Hb_001969_020 Hb_001969_020 Hb_000016_060--Hb_001969_020 Hb_000023_290 Hb_000023_290 Hb_000016_060--Hb_000023_290 Hb_148130_020 Hb_148130_020 Hb_000016_060--Hb_148130_020 Hb_006153_030 Hb_006153_030 Hb_000016_060--Hb_006153_030 Hb_002960_130 Hb_002960_130 Hb_000016_060--Hb_002960_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79216 1.54893 3.90953 33.1502 5.14746 22.5401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2335 16.0363 6.48711 8.22585 9.38225

CAGE analysis