Hb_148130_020

Information

Type -
Description -
Location Contig148130: 4241-5269
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12136: 4259-5152
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_148130_020 0.0 - - -
2 Hb_002781_030 0.0989908202 - - protein binding protein, putative [Ricinus communis]
3 Hb_010042_020 0.108591951 - - UDP-n-acteylglucosamine pyrophosphorylase, putative [Ricinus communis]
4 Hb_033152_070 0.1094981191 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
5 Hb_000928_190 0.1160480289 - - PREDICTED: putative acyl-activating enzyme 19 isoform X1 [Jatropha curcas]
6 Hb_000258_240 0.1237156315 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
7 Hb_000008_190 0.1268626416 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
8 Hb_000016_060 0.12856045 - - mads box protein, putative [Ricinus communis]
9 Hb_003052_180 0.128866686 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
10 Hb_001481_150 0.1297223447 - - hypothetical protein POPTR_0001s15440g [Populus trichocarpa]
11 Hb_000683_100 0.1304655624 - - hypothetical protein JCGZ_22137 [Jatropha curcas]
12 Hb_004881_030 0.1355357821 - - PREDICTED: uncharacterized protein LOC105629532 isoform X1 [Jatropha curcas]
13 Hb_009898_040 0.1370131588 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000107_110 0.1416193325 - - nucleic acid binding protein, putative [Ricinus communis]
15 Hb_004525_040 0.1425421612 - - PREDICTED: sugar transporter ERD6-like 6 [Jatropha curcas]
16 Hb_001999_100 0.1426845273 - - PREDICTED: UDP-glycosyltransferase 71D1-like [Jatropha curcas]
17 Hb_003207_020 0.144286256 - - PREDICTED: bifunctional dTDP-4-dehydrorhamnose 3,5-epimerase/dTDP-4-dehydrorhamnose reductase [Jatropha curcas]
18 Hb_166053_010 0.1445140995 - - glyceraldehyde-3-phosphate dehydrogenase, partial [Vernicia fordii]
19 Hb_000402_130 0.1445438861 - - PREDICTED: AP-1 complex subunit mu-2 [Jatropha curcas]
20 Hb_000136_100 0.1458684453 - - PREDICTED: syntaxin-61 [Jatropha curcas]

Gene co-expression network

sample Hb_148130_020 Hb_148130_020 Hb_002781_030 Hb_002781_030 Hb_148130_020--Hb_002781_030 Hb_010042_020 Hb_010042_020 Hb_148130_020--Hb_010042_020 Hb_033152_070 Hb_033152_070 Hb_148130_020--Hb_033152_070 Hb_000928_190 Hb_000928_190 Hb_148130_020--Hb_000928_190 Hb_000258_240 Hb_000258_240 Hb_148130_020--Hb_000258_240 Hb_000008_190 Hb_000008_190 Hb_148130_020--Hb_000008_190 Hb_002781_030--Hb_000258_240 Hb_002781_030--Hb_000928_190 Hb_000359_090 Hb_000359_090 Hb_002781_030--Hb_000359_090 Hb_013057_020 Hb_013057_020 Hb_002781_030--Hb_013057_020 Hb_001481_150 Hb_001481_150 Hb_002781_030--Hb_001481_150 Hb_010042_020--Hb_033152_070 Hb_003207_020 Hb_003207_020 Hb_010042_020--Hb_003207_020 Hb_010042_020--Hb_000928_190 Hb_001486_040 Hb_001486_040 Hb_010042_020--Hb_001486_040 Hb_004525_040 Hb_004525_040 Hb_010042_020--Hb_004525_040 Hb_000107_110 Hb_000107_110 Hb_010042_020--Hb_000107_110 Hb_033152_070--Hb_003207_020 Hb_033152_070--Hb_000928_190 Hb_033152_070--Hb_004525_040 Hb_003052_180 Hb_003052_180 Hb_033152_070--Hb_003052_180 Hb_000402_130 Hb_000402_130 Hb_033152_070--Hb_000402_130 Hb_000928_190--Hb_000258_240 Hb_000928_190--Hb_001481_150 Hb_003988_050 Hb_003988_050 Hb_000928_190--Hb_003988_050 Hb_003529_030 Hb_003529_030 Hb_000258_240--Hb_003529_030 Hb_000258_240--Hb_003988_050 Hb_062537_010 Hb_062537_010 Hb_000258_240--Hb_062537_010 Hb_000025_190 Hb_000025_190 Hb_000258_240--Hb_000025_190 Hb_118507_010 Hb_118507_010 Hb_000008_190--Hb_118507_010 Hb_002486_050 Hb_002486_050 Hb_000008_190--Hb_002486_050 Hb_001195_410 Hb_001195_410 Hb_000008_190--Hb_001195_410 Hb_004126_040 Hb_004126_040 Hb_000008_190--Hb_004126_040 Hb_002660_110 Hb_002660_110 Hb_000008_190--Hb_002660_110 Hb_000008_190--Hb_001481_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.103 28.7001 23.9016 181.499 12.6531 41.1954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
45.1118 47.572 23.807 64.9212 44.362

CAGE analysis