Hb_002660_110

Information

Type -
Description -
Location Contig2660: 81895-84195
Sequence    

Annotation

kegg
ID rcu:RCOM_1356080
description ATP binding protein, putative
nr
ID XP_012082350.1
description PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
swissprot
ID Q9S7D9
description Serine/threonine-protein kinase-like protein CCR1 OS=Arabidopsis thaliana GN=CCR1 PE=1 SV=1
trembl
ID A0A067KBB6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16498 PE=4 SV=1
Gene Ontology
ID GO:0004674
description serine threonine-protein kinase-like protein ccr1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002660_110 0.0 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
2 Hb_003052_180 0.1059669996 - - Diacylglycerol Cholinephosphotransferase [Ricinus communis]
3 Hb_000622_350 0.1083330997 - - PREDICTED: protein ABIL1 [Jatropha curcas]
4 Hb_122636_010 0.111545054 - - dienelactone hydrolase family protein [Populus trichocarpa]
5 Hb_000008_190 0.1117301909 - - PREDICTED: protein ENHANCED DISEASE RESISTANCE 2 isoform X2 [Jatropha curcas]
6 Hb_003071_070 0.1139593676 - - sucrose synthase 3 [Hevea brasiliensis]
7 Hb_001609_040 0.115974529 - - hypothetical protein POPTR_0017s05650g [Populus trichocarpa]
8 Hb_001999_100 0.1206833005 - - PREDICTED: UDP-glycosyltransferase 71D1-like [Jatropha curcas]
9 Hb_000002_480 0.1228802797 - - PREDICTED: protein WVD2-like 1 isoform X2 [Jatropha curcas]
10 Hb_000671_130 0.1243722657 - - PREDICTED: CMP-sialic acid transporter 2 isoform X2 [Jatropha curcas]
11 Hb_003994_300 0.1245330346 - - conserved hypothetical protein [Ricinus communis]
12 Hb_024074_020 0.1265314926 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
13 Hb_012651_010 0.1297535601 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
14 Hb_000074_100 0.1325356684 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000291_160 0.133015186 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
16 Hb_026740_020 0.1348053805 desease resistance Gene Name: NB-ARC NBS-LRR resistance protein RGH1 [Manihot esculenta]
17 Hb_033152_070 0.1363096755 - - N-acetyl-gamma-glutamyl-phosphate reductase, putative [Ricinus communis]
18 Hb_004126_040 0.1369680218 - - conserved hypothetical protein [Ricinus communis]
19 Hb_019181_030 0.1376305252 - - PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex subunit 6-like [Pyrus x bretschneideri]
20 Hb_009661_030 0.1389371702 - - PREDICTED: SPX and EXS domain-containing protein 1-like [Jatropha curcas]

Gene co-expression network

sample Hb_002660_110 Hb_002660_110 Hb_003052_180 Hb_003052_180 Hb_002660_110--Hb_003052_180 Hb_000622_350 Hb_000622_350 Hb_002660_110--Hb_000622_350 Hb_122636_010 Hb_122636_010 Hb_002660_110--Hb_122636_010 Hb_000008_190 Hb_000008_190 Hb_002660_110--Hb_000008_190 Hb_003071_070 Hb_003071_070 Hb_002660_110--Hb_003071_070 Hb_001609_040 Hb_001609_040 Hb_002660_110--Hb_001609_040 Hb_001842_010 Hb_001842_010 Hb_003052_180--Hb_001842_010 Hb_033152_070 Hb_033152_070 Hb_003052_180--Hb_033152_070 Hb_003052_180--Hb_003071_070 Hb_004881_030 Hb_004881_030 Hb_003052_180--Hb_004881_030 Hb_001946_180 Hb_001946_180 Hb_003052_180--Hb_001946_180 Hb_005218_020 Hb_005218_020 Hb_003052_180--Hb_005218_020 Hb_000173_060 Hb_000173_060 Hb_000622_350--Hb_000173_060 Hb_004126_040 Hb_004126_040 Hb_000622_350--Hb_004126_040 Hb_000094_290 Hb_000094_290 Hb_000622_350--Hb_000094_290 Hb_000074_100 Hb_000074_100 Hb_000622_350--Hb_000074_100 Hb_000889_100 Hb_000889_100 Hb_000622_350--Hb_000889_100 Hb_006634_110 Hb_006634_110 Hb_122636_010--Hb_006634_110 Hb_000671_130 Hb_000671_130 Hb_122636_010--Hb_000671_130 Hb_003207_150 Hb_003207_150 Hb_122636_010--Hb_003207_150 Hb_001217_010 Hb_001217_010 Hb_122636_010--Hb_001217_010 Hb_100137_010 Hb_100137_010 Hb_122636_010--Hb_100137_010 Hb_118507_010 Hb_118507_010 Hb_000008_190--Hb_118507_010 Hb_002486_050 Hb_002486_050 Hb_000008_190--Hb_002486_050 Hb_001195_410 Hb_001195_410 Hb_000008_190--Hb_001195_410 Hb_000008_190--Hb_004126_040 Hb_001481_150 Hb_001481_150 Hb_000008_190--Hb_001481_150 Hb_007574_070 Hb_007574_070 Hb_003071_070--Hb_007574_070 Hb_002603_050 Hb_002603_050 Hb_003071_070--Hb_002603_050 Hb_003071_070--Hb_000622_350 Hb_003071_070--Hb_001842_010 Hb_005993_010 Hb_005993_010 Hb_001609_040--Hb_005993_010 Hb_004055_120 Hb_004055_120 Hb_001609_040--Hb_004055_120 Hb_013394_050 Hb_013394_050 Hb_001609_040--Hb_013394_050 Hb_000742_020 Hb_000742_020 Hb_001609_040--Hb_000742_020 Hb_019181_030 Hb_019181_030 Hb_001609_040--Hb_019181_030 Hb_000152_600 Hb_000152_600 Hb_001609_040--Hb_000152_600
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.3198 0.232422 0.308053 1.68856 0.195867 0.335471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.261481 0.284883 0.27083 0.232757 0.469626

CAGE analysis